Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1613 ATGACTCAGCAGAATGTGGTAGTGTCGGATACAAAATCAGGAATCAACAGAGCCGTGACGGTTGCGCAAAAACCGCCAACGGTGCCAGGAGGGTACATTTCTTATCCAAGGAGTAGAAGGGTTTTGAAGAACCTTGAAAACAATGGAGAACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCTTCTTCTCCAACTCATGCTAAATCTAATCCTTCTCTGGCTGAAGAACAATACAAATCTTGGATTCTTCGTCACCCTTCAGCATTAGACATGTTCGAACAAATTATGGATGCTTCTAAGGGAAAGCAAATTGTTATGTTCCTGGACTATGATGGTACCCTGTCGCCTATAGTTGATGATCCTGAACGTGCTTTCATGTCCAATTCGATGAGAAAAACAGTGAGGAAACTTGCAAGGTGTTTTCCTACTGCTATAGTTACTGGTAGATGCAGAGACAAGGTATACAATTTTGTTCGGTTGGCAGAGCTATACTATGCTGGAAGCCATGGTATGGACATTAAAGGGCCATCAAAAAACTCCAAGTTCTTCAAAGGTAAAAAAGCAGAGGAAGTTCTATTTCAACCTGCCAGTGAATTTCTTCCAATGATAGATGAGGTGTACCAACAATTGGTTGAGAAAACCAAGTCAACACCAGGAGCTAGTGTTGAGAATAACAAATTTTGTGTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGGGTGAACTAGCACAGCATGTGAAATCAGTGTTAAAGGAGTACCCAAAGCTTCGTCTAACCCAAGGAAGAAAGGTATTGGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAGGCCTTGGAGTTTTTGCTAGCTTCACTTGGATTTGCCAACTGTGCCGAAGTCTTTCCAATTTATATTGGTGATGATAAAACCGATGAAGATGCATTTAAGAAACTTAGAGACAGAGGACAAGGTTTTGGGATTCTTGTTTCGAAATTTCCAAAGGACACTAGTGCTTCATACTCTTTACAAGAACCAAATGAGGTGATGGACTTTCTTCAGCGTTTGGTGGAGTGGAAACAAGTTAAATCACGTTCCCGAGTGTAA 1095 0.41 MTQQNVVVSDTKSGINRAVTVAQKPPTVPGGYISYPRSRRVLKNLENNGEQRINAWVDSMRASSPTHAKSNPSLAEEQYKSWILRHPSALDMFEQIMDASKGKQIVMFLDYDGTLSPIVDDPERAFMSNSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPSKNSKFFKGKKAEEVLFQPASEFLPMIDEVYQQLVEKTKSTPGASVENNKFCVSVHFRCVDEKKWGELAQHVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLASLGFANCAEVFPIYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMDFLQRLVEWKQVKSRSRV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1613 364 SUPERFAMILY HAD-like 106 355 IPR036412 -
Lan1g1613 364 Pfam Trehalose-phosphatase 108 342 IPR003337 GO:0003824|GO:0005992
Lan1g1613 364 TIGRFAM T6PP: trehalose-phosphatase 103 353 IPR003337 GO:0003824|GO:0005992
Lan1g1613 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 - -
Lan1g1613 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 362 IPR044651 GO:0004805|GO:0005992
Lan1g1613 364 CDD HAD_TPP 106 346 - -
Lan1g1613 364 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 107 318 IPR006379 -
Lan1g1613 364 Gene3D - 202 363 IPR023214 -
Lan1g1613 364 Gene3D - 105 193 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1613 Lan-Chr1 27552671 27556254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1613 101 352 Trehalose Biosynthesis Gene Families AT1G70290 27.206 5.16e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1613 K01087 - gmx:100794430 619.772