Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1612 ATGGCAAGTGCTATTGATATCTATAACAATGGCACTAAGATTGGTGAAAATTTCTTAGATCTCTATGATGAAGAGCTTATGAAAGTACTGGAACCTTTCATGAAAAGTGATGTATCTTTGTCAGCATGTCCTTCAACCATCTCTGATACTCGACTTTTGTCGACTCTCCCGAACTCATATCCCAACCTACTAATACCATTAAACACAATCCAAACCAATTCCATTGGGCTGAATCAGCTCACCCCATTTCAAATCAGTCAAATTCAAGCCCAAGTCCACATTCAACATCAACAATATAATTGTGAACACTGCCAAAACCGCAATTTAAAACCTTACTTATATTTCCTCGAACAACACCCAAATGAACACAGCTTCAACCTCGCACCAAAGCATGTCCCAATGAAGAAACAAACAAAGCTATACCGCGGTGTGAGGCAGCGCCATTGGGGGAAGTGGGTGGCAGAGATAAGACTCCCCAAGAACCGCACCCGTCTCTGGCTCGGCACGTTTGACACGGCGGAAGAAGCAGCGTTGGCTTATGACAAAGCTGCTTATAAACTCAGAGGCGAGTTTGCACGTCTTAATTTTCCACACTTGAAGCACCAAGGAGCACGTGTATTTGGTGAGTTTGGAGATTACAACCCTCTCCCTTCTTCTGTTCATGCAAAACTACAAGCTATTTGTGAAAACTTGGCCAGAAATCAGAAACCTGAAAATTCTGTTGAGGATATAAAGCCTCAGCAGATAGATCATGTTCCTGCAGAGGAAAAGTTTGAGGATTTTAAGGTTGATATGTCTGATGAATCTTCAGCTGGTTCTTCTTCCCCTGAATCTGTTGTTACATTCTTGGATTTCTCGGATTCTAATAAATGGAATGAGATAGAGAATTTTGGGTTGGAGAAATACCCTTCTCTTGAGATTGATTGGGATGCTATATGA 939 0.4164 MASAIDIYNNGTKIGENFLDLYDEELMKVLEPFMKSDVSLSACPSTISDTRLLSTLPNSYPNLLIPLNTIQTNSIGLNQLTPFQISQIQAQVHIQHQQYNCEHCQNRNLKPYLYFLEQHPNEHSFNLAPKHVPMKKQTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGEFARLNFPHLKHQGARVFGEFGDYNPLPSSVHAKLQAICENLARNQKPENSVEDIKPQQIDHVPAEEKFEDFKVDMSDESSAGSSSPESVVTFLDFSDSNKWNEIENFGLEKYPSLEIDWDAI* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1612 312 Gene3D AP2/ERF domain 140 198 IPR036955 GO:0003700|GO:0006355
Lan1g1612 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 312 - -
Lan1g1612 312 CDD AP2 139 199 IPR001471 GO:0003700|GO:0006355
Lan1g1612 312 Pfam AP2 domain 141 190 IPR001471 GO:0003700|GO:0006355
Lan1g1612 312 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Lan1g1612 312 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
Lan1g1612 312 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
Lan1g1612 312 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Lan1g1612 312 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Lan1g1612 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1612 Lan-Chr1 27513477 27514907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1612 3 312 AP2-EREBP Transcription Factor Family AT4G39780 50.000 3.77e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g1612 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1612 K09286 - gmx:100818839 313.923