Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1606 ATGGCACTCTCACTCTCCTCTAGTATAACCGTTTCCACCTCAAATAGAAAAGTCAAATTCGGTTTCCATCACTCTTCTCCCACTTCATGTGTTTGGAAACCCAACGCCAACAATTGCAAGACGCGTAATCTTTCTAGTTCAGCTCTTAACAGCAATAACAATAATAAGAATCCGTTAGTTGGTATTGGTATTGGTGTTATAGCAGCTTGTGTGATGAGTTTAACGCCGTTAGATGCTGATGCCACTAGAATCGAATATTATGCTACCGTTGCAGAGCCTCCGTGCGAATTGAACTATGCCAAGTCTGGGCTTGGTTACTGTGGCATTGTTGAGGGCTTTGGTGATGAAGCCCCGCTCGGTGAGCTTATCAATGTTCACTATACTGCTCGATTTGCGGATGGGATAGTGTTTGATAGTAGCTATAAACGTGCTAGACCTCTCACTATGCGCATTGGTGCTGGCAAGCTAATTGCAGGACTGGATCAGGGGATTTTAGGGGGTGAAGGAGTACCTCCAATGAGGATAGGAGGGAAACGCAAACTGAAGATTCCCCCAATGTTAGCATATGGTCCTCAACCTGCTGGCTGTTTCTCAGTTGGGCATGATTGA 609 0.4532 MALSLSSSITVSTSNRKVKFGFHHSSPTSCVWKPNANNCKTRNLSSSALNSNNNNKNPLVGIGIGVIAACVMSLTPLDADATRIEYYATVAEPPCELNYAKSGLGYCGIVEGFGDEAPLGELINVHYTARFADGIVFDSSYKRARPLTMRIGAGKLIAGLDQGILGGEGVPPMRIGGKRKLKIPPMLAYGPQPAGCFSVGHD* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1606 202 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 117 193 IPR001179 GO:0003755
Lan1g1606 202 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 120 202 IPR001179 GO:0003755
Lan1g1606 202 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 8 198 IPR044183 GO:0009507
Lan1g1606 202 SUPERFAMILY FKBP-like 99 196 - -
Lan1g1606 202 Gene3D - 92 200 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1606 Lan-Chr1 27424950 27440605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1606 101 190 Calmodulin-binding Proteins AT3G25230 39.560 1.73e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1606 K01802 - gmx:100500547 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0367 12 8832443 8835964 Lan1g1606 1 27424950 27440605 LSH
Lan12g0641 12 13242481 13244688 Lan1g1606 1 27424950 27440605 LSH