Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1604 ATGACTACCGCGATGTCTTGGAGGCATGTTGCCAATAATGGCAACAGCCTTTCTGATCTGGATAGAAATGGTGATGAGAAGACTCAAGTTTCGGAACCTCCAACTCCACATTCTGTTCTGAAGATGGGGTTAAGAGACCGTAGCAGCAGCATGGAGGATTCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAAAACTCATCCTCTGCGCAAGAGAAAGAGTATTCCTTAAGGCAATTATTGGAGCTTATACATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCATTCTCAAGCCGTTCCAGTACTTGTTTCCCTTCTCCGGTCTGGTTCATTGAATGTGAAGATACAGGCGGCAACTGTCTTGGGCTCTCTTTGTAAAGAAAATGAGCTTAAGGTCAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTACTAAAGTCTAGTTCAACTGAAGGGCAACTTGCTTCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGTGCAAAAGATCACGTAGGCTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTGCTGTGGGAGAAGCTGCAAAAGGGCCTGAAGGCAGGAAATGTAGTTGAAAGTTTATTGACTGGGGCATTGAAAAATCTGTCCAGCAATACTGAGGGATTTTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAGTTAAGCTACTAGCAACAGGAGAGTCTAGCAATTTAGCTAATGTGTGCTTTTTACTTGCTGCTGTAATGATGGAGGACGCATCTGTTTGTTCAAAGGTGTTGACAGCAGATGTGACAAAACAACTCCTGAAACTATTAGGCCCTGGTAATGATGACCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCACAATGCAAAGACGCAAGGCGAGAGATAGCCAATTTTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATACATGCAGGGTGAGTGTGCTCAAGCATTGCAGGAGAATGCTATGTGTGCTCTGGCAAACATCTCCGGTGGTTTGTCTAATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCTCCTACCCAAGTTGCTGACACATTAGGAGCTTTAGCTTCAGCTCTTATGATATATGATAACAAGGCTGAATCTACCAGAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTCAAACAACTTAAACCTCGCTTGCCATTCCTTGTGCATGAACGCACTATTGAAGCCCTAGCTAGTTTGTATGGCAATTCCGTGCTGTCAATTAAACTTGAAAATTCTGATGCAAAACGGTTGCTTGTTGGTTTAATAACAATGGCTGTCAATGAAACACAAGATGAACTTGTAAAAGCTTTCTTGACACTGTGCAATAGTGAAAGCAGTCTATGGCATGCACTTCAAGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTCTAGGGCTTTCATCAGAACAGCAGCAAGAATGCGCAGTCGCTCTTCTTGGCCTTCTATCTAATGAAAATGATGAAAGTAAGTGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAGATTTTGGAGACAGGATCTGCAAAAGCAAGGGAAGAATCAGCAACAATCCTTAAGAACCTATGCAATCACAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGACGCTGTTCCTGCATTGTTGTGGCTTTTGAAGAATGGAAGCACTAATGGGAAGGATATTGCAGCGAAGACCTTACATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATGCTTTAAGAAGTATGCTTTCTGTTGCTCCTCTTAGTGACATTCTGCGTGAAGGTAGTGCTTCCAGTGATGCATTTGATACCGTGATAGCATTATTGAGCTCTACCAAGGAAGAAATTCAGGCAAAGTCTGCATCAGCTCTAGCAGGAGTTTTCAAAATGAGAAAAGATGTTCGTGAAAGCAGCATTGCTGTTAAAACACTTTTGTCAGCCATCAAATTGCTTAATGCTGAATCTGAAAGTATCTTAATGGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCTATCAAAGAGAACAGGGATGTAGCTGGTGTTGCCAGAGATGCACTATCCCCACTAGTTGCACTAGCTAACGCTTCAGTTTTGGAAGTTGCAGAGATGGCAACATGGGCTGTGGCTAATCTTATTTTGGATAGTGGAATTGCAGAGAAAGTTGTTACTGAAGAAGTTATCTTGCCTGCTACCAGAGTATTATGTGAAGGTACAATTTCTGGTAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCCTACATTCTCGCAAAGTTGACGATGCTGTAACTGATTGTGTGAGTCGTGCTGGCACTGTTCTCGCATTAGTTTCCTTCTTAGATTCTGCTATTAATGAATCTGTTTCCACATCAGAAGCTCTAGAAGCACTTGCCATTTTATCCAGGTCAGAAGAGACCAGTGCACATATCAAACCTGCATGTGCAGTTTTGGCTGAAGTCCCTGGAAGCATAAGTCCGATAGTCCTGTCTATTGTTCATTCGACACCTGTGTTTCAGGATAAAGCTATTGAGATATTATCCCAATTATGCAAGGACCAGCCTGTAATTTTAGGAGATACTGTTGCTACTGCCTCTGGATGTATATCTTCAATAGCTAACAGGATAGTTAGTTCCACAAATGTAAACGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTTCAAAGGCAAATCATCAGAGACTATTCGAGGATCTCAATTTATCAACCTTATGCACTACTCTTATTCAGGCTCTAGTTGATGTGCTTACTTCTGCACTGTCTTCTTTAGGCAATGAGGGTGACGACAGCAAGGAACTCATCAGCATATGCAGGCATACAAAAGAAGATGCCAACAGTGGTGAATCCAACACTAGCACCACCATTATATGTGGTGCCAACTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAGAAAAACAGAACTGCAATAATGGAGGCTGGAGCAGTTGATGTTCTTACAGATAGGATCTCAAATTGTGCCTCACAATATTCTCAGATTGATAACAAAGAAGATAGCAGCAAGTGGATATGTTCTTTGTTGTTAGCCATTTTATTTCAAGATAGAGATATCATACGAGCACATGCGACCATGAAATCTGTATCAGCACTTGCCAATTTGTCGAGGTCAGAGGAATTGGCAGACAAATATTTTTCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGTAGGGGAACACTTTTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGGCTTATATCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAAATGTCAGAGGAATTTTCTTTGGTCCGGTATCCTGATCAAGTTTCTCTGGAGAGGTTGTTTAGAGTTGATGATATAAGAGTCGGTGCCACTTCTCGGAAGGCAATACCTGCACTAGTTGATCTTCTCAAACCGATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGATTCAACTTGCTAGAGATTGCCCATCGAATAAGATTATAATGGTAGAGTCTGGGGCCTTAGAGGCACTTACAAAGTATCTTTCACTGAGTCCACAAGATTCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTTTTTAGTAGTGCGGACATAAGGAAACATGAGTCAGCATTTGGTGTTGTTGCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTACTAAAGCCTTGGAAAGTTTATTCTCTGCTGACCACATTAAAAATGCAGAGACTGCTCGACAAGCGGTTCAGCCCTTGGTGGAGATACTCAATACTGGTTCAGAGAAGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTGCTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATTTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCTGATTGTTCAATGGACCTCAAAGCAGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACGATGGCTGCTGCACGCTGTGTTGAACCTCTAGTCTCTCTCCTTGTAACTGAGTCTAGTCCTGCTCAGCATTCAGTCGTTCGTGCATTGGATAGGGTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCCGCACATGGTGCAATTGTTCCTCTTGTTGGCCTACTGTATGGTAGGAACTATATACTTCATGAGGCTGTTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATATTACATGAAGCACCTGATTTTTTATGTGCAGCTTTCGCAGAATTACTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACAATCTGCTGCTAAAGTGGTTGAACCCTTGTTTTTGTTGCTGACAAGACAAGAAGTTGGACCTGATGGACAACATAGTGCACTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGACCATAGATTGACTTCTCACCAAGTTATTGAACCACTTATCCCCTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCAGTAACACAGCAGGTAATCGGTCCTCTTATACAATGTCTTGGTTCCGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTAACTTGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTGATATTGCAAGCTGATCCTTACCTTCCTCACGCGTTATGGGAGTCTGCTGCATCTGTTTTGTCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTGTTGCTGTTTTAGTAAGGCTGCTTCGATCTGGATCAGATGCCACTGTTCTTGGTGCTTTAAATGCTCTTCTAGTGTTGGAAAGTGATGATGGAACTAGTGCAGTAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCTTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCCTAGAAGTACTGTTGAACAATATAAAGATCCGAGAAACAAAAGCTACCAAGTCAGCTATCTTACCATTATCACAGTACCTTTTGGATCCACAAACCCAAGCACAACAGGCAAGGTTATTGGCAACTTTGGCTCTTGGGGACCTGTTACAGAATGAGGGTCTTGCTCGAACAGCTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACGGAAGAAATAAAAATGGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAACAAAAGAGCAGTTGCAGAAGCTGGCGGTGTTCAAGTTATATTGGATCTGATAGGTTCAAGTAAACCAGAAACATCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCCAGTGAGACAGTCAGATCGATAACTGCCGCTATTGAAAAAGATTTATGGGCCAGTGGTACTGTGAATGAAGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCGCGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTGAAATCAGGCTCTGAGGGTTGTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAAAGCTCAGTCAGTAGCAGCTGCAGATTCTATTCCATTTCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTACAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTTGGAAACCCGAGTGTTTACTGTAAGCTTACACTTGGCAACACTCCACCAAGGCAAACCAAGGTGGTCTCAACCGGCCCTAATCCGGAATGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGACAGAAGCTTAACATTTCATGCAAAAATAAGAGCAAAGTAGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATAGAGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTACACACTGTTGCCTCAAAGTAAAAGTGGACCACCAAGGAATCTAGAAATAGAATTCCAGTGGTCTAACAAGTGA 6450 0.4271 MTTAMSWRHVANNGNSLSDLDRNGDEKTQVSEPPTPHSVLKMGLRDRSSSMEDSDGTLASVAQCIEQLRQNSSSAQEKEYSLRQLLELIHMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELKVKVLLGGCIPPLLGLLKSSSTEGQLASAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEKLQKGLKAGNVVESLLTGALKNLSSNTEGFWNATIQAGGVDILVKLLATGESSNLANVCFLLAAVMMEDASVCSKVLTADVTKQLLKLLGPGNDDPVRAEAAGALKSLSAQCKDARREIANFNGIPALINATIAPSKEYMQGECAQALQENAMCALANISGGLSNVISSLGQSLESCTSPTQVADTLGALASALMIYDNKAESTRASDPLAVEQTLLKQLKPRLPFLVHERTIEALASLYGNSVLSIKLENSDAKRLLVGLITMAVNETQDELVKAFLTLCNSESSLWHALQGREGVQLLISLLGLSSEQQQECAVALLGLLSNENDESKWAITAAGGIPPLVQILETGSAKAREESATILKNLCNHSEDIRACVESADAVPALLWLLKNGSTNGKDIAAKTLHHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDILREGSASSDAFDTVIALLSSTKEEIQAKSASALAGVFKMRKDVRESSIAVKTLLSAIKLLNAESESILMESSHCLAAIFLSIKENRDVAGVARDALSPLVALANASVLEVAEMATWAVANLILDSGIAEKVVTEEVILPATRVLCEGTISGKTHAAAAIARLLHSRKVDDAVTDCVSRAGTVLALVSFLDSAINESVSTSEALEALAILSRSEETSAHIKPACAVLAEVPGSISPIVLSIVHSTPVFQDKAIEILSQLCKDQPVILGDTVATASGCISSIANRIVSSTNVNVKIGGAALLICASKANHQRLFEDLNLSTLCTTLIQALVDVLTSALSSLGNEGDDSKELISICRHTKEDANSGESNTSTTIICGANLAIWLLSILACHDEKNRTAIMEAGAVDVLTDRISNCASQYSQIDNKEDSSKWICSLLLAILFQDRDIIRAHATMKSVSALANLSRSEELADKYFSAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLEMSEEFSLVRYPDQVSLERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLIQLARDCPSNKIIMVESGALEALTKYLSLSPQDSTEEAATDLLGILFSSADIRKHESAFGVVAQLVAVLRLGGRAARYSATKALESLFSADHIKNAETARQAVQPLVEILNTGSEKEQHAAIAALVRLLSENPSRALAVADFEMNAVDVLCRILSSDCSMDLKADAAELCCALFGNTRIRSTMAAARCVEPLVSLLVTESSPAQHSVVRALDRVVDDEQLAELVAAHGAIVPLVGLLYGRNYILHEAVSRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNASIAKGQSAAKVVEPLFLLLTRQEVGPDGQHSALQVLVNILEHPQCRADHRLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIQCLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPYLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSDATVLGALNALLVLESDDGTSAVAMAESGAIEALLELLRSHQCEETAARLLEVLLNNIKIRETKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLLQNEGLARTADAVSACRALVNVLEDQPTEEIKMVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSKPETSVQAAMFVKLLFSNNTIQEYASSETVRSITAAIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKSGSEGCQEAALDALFLLRQAWSACPAEVSKAQSVAAADSIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLNISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPQSKSGPPRNLEIEFQWSNK* 2150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1604 2149 SUPERFAMILY ARM repeat 1578 1980 IPR016024 -
Lan1g1604 2149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2028 2131 IPR035892 -
Lan1g1604 2149 Gene3D - 647 817 IPR011989 -
Lan1g1604 2149 SMART C2_3c 2029 2125 IPR000008 -
Lan1g1604 2149 Gene3D - 818 1167 IPR011989 -
Lan1g1604 2149 SUPERFAMILY ARM repeat 699 1157 IPR016024 -
Lan1g1604 2149 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 17 2149 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lan1g1604 2149 Pfam C2 domain 2028 2119 IPR000008 -
Lan1g1604 2149 Gene3D - 407 646 IPR011989 -
Lan1g1604 2149 SUPERFAMILY ARM repeat 1187 1566 IPR016024 -
Lan1g1604 2149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Lan1g1604 2149 Gene3D - 1176 1363 IPR011989 -
Lan1g1604 2149 CDD C2 2030 2120 - -
Lan1g1604 2149 Pfam Armadillo/beta-catenin-like repeat 102 132 IPR000225 GO:0005515
Lan1g1604 2149 Pfam Armadillo/beta-catenin-like repeat 523 562 IPR000225 GO:0005515
Lan1g1604 2149 SUPERFAMILY ARM repeat 59 609 IPR016024 -
Lan1g1604 2149 ProSiteProfiles C2 domain profile. 2009 2126 IPR000008 -
Lan1g1604 2149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1823 1866 IPR000225 GO:0005515
Lan1g1604 2149 SUPERFAMILY ARM repeat 465 815 IPR016024 -
Lan1g1604 2149 SMART arm_5 92 133 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1479 1519 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 815 857 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 482 521 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1728 1767 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1309 1350 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 309 358 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1812 1853 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1607 1646 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1396 1436 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1855 1895 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 134 174 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 523 563 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1564 1605 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 266 307 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 565 605 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1437 1477 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 1227 1268 IPR000225 GO:0005515
Lan1g1604 2149 SMART arm_5 731 769 IPR000225 GO:0005515
Lan1g1604 2149 Gene3D - 1795 2026 IPR011989 -
Lan1g1604 2149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1194 1238 IPR000225 GO:0005515
Lan1g1604 2149 Gene3D C2 domain 2027 2149 IPR035892 -
Lan1g1604 2149 MobiDBLite consensus disorder prediction 1 19 - -
Lan1g1604 2149 Gene3D - 1364 1669 IPR011989 -
Lan1g1604 2149 Gene3D - 1675 1794 IPR011989 -
Lan1g1604 2149 Gene3D - 47 405 IPR011989 -
Lan1g1604 2149 MobiDBLite consensus disorder prediction 1 53 - -
Lan1g1604 2149 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 17 2149 - -
Lan1g1604 2149 Coils Coil 295 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1604 Lan-Chr1 27391248 27401707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1604 496 618 U-box Gene Family AT2G23140 40.000 1.42e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1604 - - gmx:100794002 3573.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1832 1 33300769 33312111 Lan1g1604 1 27391248 27401707 LSH
Lan1g1604 1 27391248 27401707 Lan15g0075 15 502352 515284 PCT