Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1579 ATGGCGAAATCAAGTGAAAATGAACTCCCACACAAGTGTTTTGGTTGGGCTGCAAAAGATTCTTCTGGCATCCTTTCTCCTTTCCATTTCTCTAGAAGGGAAAATGGCCCTAATGATGTTGCTATTAAAATCCTTTTTTGTGGAGTTTGCCATTCGGATGTGCATTCTGTTAAAAATGACTGGGGTTTCACAACTTACCCTGTTGTTCCCGGGCATGAGATTGTTGGCATTGTAACAAAAACTGGAGAAAATGTAAAAAAATTCAAAGTGGGTGATAGAGTTGGAGTTGGTGTTATTGTAGAGTCTTGTAAGGAATGTGATATTTGCCAACAAGATTTGGAGTGTTACTGTTCTAAACTTGTTTTTACCTATAACTCTCCTTATTATGATGGAACAAGAACCCAAGGTGGCTTTTCTGATTTTGTGGTTGTTCATGAGCGCTTTGTTCTTCAATTTCCTGATAACTTGCCCCTTGATGCTGGTGCTCCATTACTGTGTGCTGGAATCACTGTGTATAGCCCAATGATTTATTATGGGATGACTGAACCAGGAAAACTTATGGGTGTGGCTGGGCTTGGTGGGTTAGGCCATGTTGCAGTCAAGTTTGCTAAAGCATTTGGGCTGAAAGTTACTGTTATTAGTAACTCTCCAAACAAGGAATCTGATGCTATTGAGAGACTTGGGGCTGATTCTTTCATTCTATCCACAGATACTGCAACATTGAAAGCAGCTATAAGGACAATGGATTATATCATAGACACAATTCCTTCTGATCATTCTCTGAATTCATTGCTTTCTCTACTCAAGCCGAATGGGAAGCTGATCACGGTTGGGTTGCTTAACAAGCCGCTCGAGCTCACAACGTTTCCATTAGTTATGGGAAGAAAGCTTATAGGAGGGAGCACCTTGGGAGGGTTAAAGGAGACCCAGGATATGCTTGATTTTTGTGGGAAACACAGCATAGTTGCTGATATTGAGCTGATCAAGATTGATCAAATCAATACAGCCATTGAAAGGATTGTCAATTCTGATGTGAAATATCGCTTTGTGGTTGATGTGGCTAATTCCTTATCAACTACTTCATAG 1086 0.4042 MAKSSENELPHKCFGWAAKDSSGILSPFHFSRRENGPNDVAIKILFCGVCHSDVHSVKNDWGFTTYPVVPGHEIVGIVTKTGENVKKFKVGDRVGVGVIVESCKECDICQQDLECYCSKLVFTYNSPYYDGTRTQGGFSDFVVVHERFVLQFPDNLPLDAGAPLLCAGITVYSPMIYYGMTEPGKLMGVAGLGGLGHVAVKFAKAFGLKVTVISNSPNKESDAIERLGADSFILSTDTATLKAAIRTMDYIIDTIPSDHSLNSLLSLLKPNGKLITVGLLNKPLELTTFPLVMGRKLIGGSTLGGLKETQDMLDFCGKHSIVADIELIKIDQINTAIERIVNSDVKYRFVVDVANSLSTTS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1579 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Lan1g1579 361 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Lan1g1579 361 SUPERFAMILY GroES-like 22 185 IPR011032 -
Lan1g1579 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Lan1g1579 361 Pfam Alcohol dehydrogenase GroES-like domain 37 151 IPR013154 -
Lan1g1579 361 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 358 - -
Lan1g1579 361 PANTHER ALDEHYDE REDUCTASE 12 358 - -
Lan1g1579 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Lan1g1579 361 CDD CAD1 14 352 - -
Lan1g1579 361 Gene3D - 16 353 - -
Lan1g1579 361 Gene3D - 167 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1579 Lan-Chr1 26725253 26734980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1579 11 357 Monolignol Biosynthesis Gene Families AT2G21890 68.103 1.50e-177 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1579 K00083 - gmx:100819684 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0672 12 13527571 13531300 Lan1g1579 1 26725253 26734980 LSH