Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1578 ATGGATTTGGAGGATTTTCGATCCATAATGGAGAGTGCCAGCGTGGACGTTTGGTTATTGATCGATGCTGCGATCACCGTCGCTTCCGTCGATAACGCCGACGAATTGAAATGTCGAAGAGACCAAATCGTGGAGCGACTTTACACCGCCACGTCAGCACTTCCGCCGTGTCGGAATTGTGAGACCAATAACAATGGTGAAATCGTTAAAGTGGAAGAGGAGGAGGAGGAGGAGTTGGAACCTTATGGAGGTTTATCTGATGATGAGCAGAAGAAGATTCTAGAGATTAAGCAACAACTTGAATACCCTAACCAGTCTGAAGAATCTTTGATAGAGCTGCTACATACACTCGCTGATATGGATATTACATTCGAAGAGTTACAGGATACTGACATTGGGAGGCATGTGAATAAGTTGAGGAAGCATTCTTCCAATTATGTTAGGAAATTCGTGAAGCTTCTTGTCAGTAAGTGGAAAGGAATTGTAGATGAATGGGTGAAGTCAAAGACGTCTGGAGAAGAAGTTACTAATGTCATGGTTGATGAAGATTCGCCTCAGCAGAAAACAGCACAGAATGGGCATCATCAGAGTCCTGATTTTGCATACTCACCAAATCCACCAAATGGAAATTCTGGGTCAGAAGTAGAACTAAAAAAACCAAAAGCAATTCCTCACAAAGTAGCTCCTCCAAAACCAGCACATGCACCACCATCACTTCGTACTTCTGATCCTCAAAATAGACAGAGGGAAAACAATTTTGACTCTCAGAAACTTGATTCTGCTACAAAACGCCTCCAAGAGAACTACAAAGAAGCCGCAAATGCTAAAAAGCAGAGAACAATCCAAGTGATGGATCTTCATGAGTTACCAAAACCCAAGAACAAGAATGCATTCTTTGGAAAGAAATAA 909 0.4224 MDLEDFRSIMESASVDVWLLIDAAITVASVDNADELKCRRDQIVERLYTATSALPPCRNCETNNNGEIVKVEEEEEEELEPYGGLSDDEQKKILEIKQQLEYPNQSEESLIELLHTLADMDITFEELQDTDIGRHVNKLRKHSSNYVRKFVKLLVSKWKGIVDEWVKSKTSGEEVTNVMVDEDSPQQKTAQNGHHQSPDFAYSPNPPNGNSGSEVELKKPKAIPHKVAPPKPAHAPPSLRTSDPQNRQRENNFDSQKLDSATKRLQENYKEAANAKKQRTIQVMDLHELPKPKNKNAFFGKK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1578 302 MobiDBLite consensus disorder prediction 250 274 - -
Lan1g1578 302 Coils Coil 258 278 - -
Lan1g1578 302 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 301 IPR044790 -
Lan1g1578 302 MobiDBLite consensus disorder prediction 184 302 - -
Lan1g1578 302 ProSiteProfiles TFIIS N-terminal domain profile. 88 165 IPR017923 -
Lan1g1578 302 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 91 172 IPR035441 -
Lan1g1578 302 CDD TFIIS_I 90 163 - -
Lan1g1578 302 SMART TFS2_5 93 164 IPR003617 GO:0005634
Lan1g1578 302 Pfam TFIIS helical bundle-like domain 112 162 IPR017923 -
Lan1g1578 302 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 85 176 IPR035441 -
Lan1g1578 302 MobiDBLite consensus disorder prediction 281 295 - -
Lan1g1578 302 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 301 - -
Lan1g1578 302 MobiDBLite consensus disorder prediction 184 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1578 Lan-Chr1 26661445 26663977 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lan1g1578 Med26 4.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1578 - - gmx:100796457 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1861 1 33783690 33784108 Lan1g1578 1 26661445 26663977 LSH