Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1572 ATGTATGCTTCTACTTCACACCTTGTCCATGACCTTCTTGGAGACTCTCACACAAGAAGGTTACTCCTTCAAAACACACTTAACCAATCACCCAACTCAGCCAACTCCCCTGCACCTTCCATACACAGCCACAACTCAACAAACCTATTTTCTCGAAGCCGTAATTTCGATGCGAATGTTGTCATGTTACTCTCAGTCCTATTGTGTGGTGTCATTTGCTTTCTCGGCTTGAGTGCCATCATAATGTGTGTCTTAAAGTGTTCAAACTACTCATCCAGAACAAGCAACCAATCGCCAAAGTTAGCGAACACCGGAATCAAGAAGAAAGTTCTTAAGACTTTTCCTATAGTTACCTACTCAGCTGAGATGAACCTTTCAGGTTTGGATACTGAGTGTGTGATATGCCTCTCAGAGTTCACCAAAGACGACAAGGTTCGCGTTTTGCCCAAGTGCAACCATGGTTTTCATGTTCCTTGCATTGATAAATGGCTGAATTCACACTCATCTTGCCCCAAGTGTAGACAGTGCCTTATTGAGACTTGCCACAAAATTGTTGGATCACAACCTGCAACTGTGGTGCCACTGCCACTGCCAGAATCCATTATAAGGATTGAACCACTTGAGCCAGAAGGTTTGGTGTGTAACTATAGGGAATCAAGCTAA 663 0.4359 MYASTSHLVHDLLGDSHTRRLLLQNTLNQSPNSANSPAPSIHSHNSTNLFSRSRNFDANVVMLLSVLLCGVICFLGLSAIIMCVLKCSNYSSRTSNQSPKLANTGIKKKVLKTFPIVTYSAEMNLSGLDTECVICLSEFTKDDKVRVLPKCNHGFHVPCIDKWLNSHSSCPKCRQCLIETCHKIVGSQPATVVPLPLPESIIRIEPLEPEGLVCNYRESS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1572 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 178 IPR013083 -
Lan1g1572 220 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lan1g1572 220 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 219 - -
Lan1g1572 220 Pfam Ring finger domain 131 174 IPR001841 -
Lan1g1572 220 PANTHER RING-H2 FINGER PROTEIN ATL78 4 219 IPR044602 GO:0016567|GO:0016740
Lan1g1572 220 SMART ring_2 132 173 IPR001841 -
Lan1g1572 220 SUPERFAMILY RING/U-box 110 179 - -
Lan1g1572 220 CDD RING-H2_PA-TM-RING 131 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1572 Lan-Chr1 26597809 26598552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1572 41 183 C3H Transcription Factor Family AT1G76410 45.946 1.08e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1572 K19040 - gmx:100780127 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0677 12 13578051 13578855 Lan1g1572 1 26597809 26598552 LSH
Lan1g1873 1 33908397 33909642 Lan1g1572 1 26597809 26598552 LSH
Lan1g1572 1 26597809 26598552 Lan15g0539 15 12521876 12522715 PCT
Lan1g1572 1 26597809 26598552 Lan14g0491 14 10495047 10496716 PCT
Lan15g0539 15 12521876 12522715 Lan1g1572 1 26597809 26598552 PCT
Lan14g0491 14 10495047 10496716 Lan1g1572 1 26597809 26598552 PCT