Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1570 ATGGTGAGAGACGATTTATACATCACGGTTCCCAGTTTCTTTCTGTGCCCTATTTCCCTCGACGTGATGAAATCCCCTGTGAGTCTCTGCACCGGAGTTACATACGACCGCAGCAGCATCCAACGCTGGCTTGACAACGGCAACAACACTTGCCCTGCCACGATGCAAGTTCTTTACACTAAGGATTTCGTTCCTAACCGTAACTTGCAGAGCCTTATTCAGATCTGGTCTGACTCGGTTCAGAAGAGGGTTGACTCGCCCGAGTCCAAAGCGGTTACTGAATCGGAGTTAGTACCTTCACGGGACCAAGTACTCTCCGCCATCGCTGATGTTGAGGGGGATTGCGGGAACAACCGAGTTGACTCGCTCGTGAAAATCGTTCGTTTCGCTCTGGATTCCGATGAGAAACGCGATTTTCTCGCGAAGGTTGACGGCTTCGTGGCTAGGCTGGTTGGTTTACTTCACAATGTTGATGGTGGAGTTGAATTACTTGAGATGGTTTTGAAGGCGTTGGATTTGGTTCTAGAGAAAATCGATGATCGCGAGTGGTTTAAAAACTCGATGCTGAAGAAACAGAGCGATGGAGAAAACAGATGTAACTGCTTAGATTCTCTGCTTCTCGTTCTACAACGAGGAAGCTCTGGTTCTAAGATCGCATCGGTTAGGGTTTTGAAATCCATCGCCATGGACGCAGAATCGAAGCTTTTGATAGCGGAAAAAGAAGGCCTGGTATCGGAATTACTCAATCTAATCGCACCGGAGAAAACACCTGCCCTAATTGAAAACTGCTTATCGTGTTTGATCGCAATTTCAACGCCGAAACGCAATAAGGTGGAGCTAGTTCATCTCGGAGCCATAAGAACATTCTCGAAACTTCTATTGGAATCAAATTTAACCGTTTCGATTGTGGAAAAAGTGCTGAAGCTGTTGGAAACGATGTCGTCTAGGAAGGAAGGGAGGGTTGAGATATGCGAGGACCCGGAGTGCGTGGCAGCGATACTGAACAAGGTTATGAAGGTTTCAAGCATAGCGACGGAGAACGCGGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATCAGAAGGCGCAAGAAGCGGTTACCAAAGCAAACGGCTTAACGAAAATTCTGCTTTTGATGCAGAGTAATTGTTCCCCCTCTGTGCGCCAAATGTCTTCAGATTTGCTTAAGATTTTTCGGGTGAATTCTAAGTCTTGTCTCTCTTGTTATGACACAAAAACTACTCATATTATGCCCTTTTGA 1266 0.466 MVRDDLYITVPSFFLCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLYTKDFVPNRNLQSLIQIWSDSVQKRVDSPESKAVTESELVPSRDQVLSAIADVEGDCGNNRVDSLVKIVRFALDSDEKRDFLAKVDGFVARLVGLLHNVDGGVELLEMVLKALDLVLEKIDDREWFKNSMLKKQSDGENRCNCLDSLLLVLQRGSSGSKIASVRVLKSIAMDAESKLLIAEKEGLVSELLNLIAPEKTPALIENCLSCLIAISTPKRNKVELVHLGAIRTFSKLLLESNLTVSIVEKVLKLLETMSSRKEGRVEICEDPECVAAILNKVMKVSSIATENAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPSVRQMSSDLLKIFRVNSKSCLSCYDTKTTHIMPF* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1570 421 Gene3D - 115 414 IPR011989 -
Lan1g1570 421 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lan1g1570 421 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lan1g1570 421 PANTHER WDSAM1 PROTEIN 4 421 IPR045185 GO:0061630
Lan1g1570 421 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 421 - -
Lan1g1570 421 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lan1g1570 421 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lan1g1570 421 SUPERFAMILY ARM repeat 130 403 IPR016024 -
Lan1g1570 421 SUPERFAMILY RING/U-box 5 78 - -
Lan1g1570 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 98 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1570 Lan-Chr1 26476790 26478210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1570 1 421 U-box Gene Family AT5G64660 53.917 9.20e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1570 - - gmx:100799627 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0681 12 13618803 13620258 Lan1g1570 1 26476790 26478210 LSH