Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1569 ATGCTGAGCTCTAATGAAGGAGATAATGATGTATTCTTTGACTCAATAGATAGTTTGTCACCTCAAGATTGTGGTTTAACCAAACAAGAGTTTAGTTCAGATTATGAAATTTGGGTGAATGAGCCTCTAAGTGTGAAAGAAAGGCGGGGACGGTTTCTTCAGGCTATGGGCTTATATGAAACTTCTGCTTCCAAGATTGGTTCACAAGAGAAAATGATGAGCCTAGAAAGGATCGAGGAGTGCAGTAGAGCAGTATCGAATGCTTGTAATTTGGCTACTGATCAAAGTAGCTTGGTTCTCTCTGGATGCAGAGCAGCTTCTGAAACAGAAGCCTGGTTTGATGGACTGAAAGGGAGGCCACAACTTAAACCAGATGTAAGTTTTGAAGGGAAAGTGCATGAGCTGTCTTTTACGGGTCATGAGCAGAGACATAGAGAAGCTGAGGCACGCGAAGAATGTCAGGATTTTGAGATGGGTATAAAGAAGAAGAAGAAATGGTGGTTCAAGAAAGGCGTTGAAGGAAAAGTCAGATCGAAATTGAATACGGGGACGAATAGAACTCGTAGAGTAAAGGTAAGACAGAATAAAAAGAGGTGGATGGAGTTCAGTGGGCTATACATTGGACAACAGATCAGAGCACACAAAGGCTTAATCTGGACCATGAAATTTAATCCCAATGGTCATTATTTAGCGAGTGGTGGCGAAGATGGCGTTGTGCGAATATGGCATGTTATATCACTGGATACATCTAGTATTTGTTTCACTACAGAGGATAGTACTGCTAGCAAATTGAAGTTTGAGAACTCTTATCATCAGAAGAAGCTTTCAAATCAATCCTTCATTTTCCTTCCAAATAAAGTTTTCCAAATTGAGGAGTCACCACTACAAGAATTTTATGGTCATTTCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTCTCCTCTTCTATGGATAGAACTGTTCGTTTGTGGCGAATTGGTTGCAATCAATGTCTAAGTATTTTCCATCACAATGACTATGTGACATGCATTCAGTTCAACCCAGTTGATGAAAATTACTTCATCAGCGGGTGCATAGATGGCAAAGTCAGAATATGGGGAATACGTGAAGAGCGAGTAGTTGATTGGGCAGACATACGAGATGTCATAAGTGCCATAAGTTACCAGAAAGATGGGAAAGGATTTGTAGTTGGTTCCATTACAGGCACTTGTCACTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCACATATACTTGTGCATGGAAAGAAGAAAGCATCAGGGACCAAGATTACTGGAATTCAGTTTTCCCAAAAAAACCATCAGAGAATTATGATCACATCAGAAGATTCCAAAATTCGCATATTTGATGGCATTAAGCTTATTCATAAATACAGAGGCCTTCCAAAATCAGGAAGCCAAATGCATGGTTCATTTACATCAAATGGAAAACATATAATTTCAGTTGGAGAAGATTCTCATGTGTATATTTGGAACCACAATGACACTAAAAATGCTTCAACCAAAAAGAAAAAATCTGAGTCCTCTTGTGAGTACTTTTTCTCTAAGGGTGTTACTATTGCAATACCTTGGTCAGGTATGAATGCTGAACAAAAGGGTCCATGTAGTAATTTCAAGCAGCATTCTTCAGAAATGAATTCAGAGCGATTCTCTTTGGGTAGTTGGTTTTCCATTGATGGTACATGCCGAGGCTCGACGACATGGCCCGAAGAGAAACTTCCATACTGGGATTTACCTCATGCAAAAGATGAATATGAAAAGCAGAAGTTATATCATAAAGACACTTCTCTTGATAGAGGGGTACCTGAAACATGGGGACTATCAATTGTGGCTGCTGGTTGTGATGGAACTATTAAGACATTCCACAACTTTGGATTGCCCATTAGGTTTTAA 1932 0.3949 MLSSNEGDNDVFFDSIDSLSPQDCGLTKQEFSSDYEIWVNEPLSVKERRGRFLQAMGLYETSASKIGSQEKMMSLERIEECSRAVSNACNLATDQSSLVLSGCRAASETEAWFDGLKGRPQLKPDVSFEGKVHELSFTGHEQRHREAEAREECQDFEMGIKKKKKWWFKKGVEGKVRSKLNTGTNRTRRVKVRQNKKRWMEFSGLYIGQQIRAHKGLIWTMKFNPNGHYLASGGEDGVVRIWHVISLDTSSICFTTEDSTASKLKFENSYHQKKLSNQSFIFLPNKVFQIEESPLQEFYGHFSDVLDLAWSNSDILLSSSMDRTVRLWRIGCNQCLSIFHHNDYVTCIQFNPVDENYFISGCIDGKVRIWGIREERVVDWADIRDVISAISYQKDGKGFVVGSITGTCHFYVASGKYFQLEAHILVHGKKKASGTKITGIQFSQKNHQRIMITSEDSKIRIFDGIKLIHKYRGLPKSGSQMHGSFTSNGKHIISVGEDSHVYIWNHNDTKNASTKKKKSESSCEYFFSKGVTIAIPWSGMNAEQKGPCSNFKQHSSEMNSERFSLGSWFSIDGTCRGSTTWPEEKLPYWDLPHAKDEYEKQKLYHKDTSLDRGVPETWGLSIVAAGCDGTIKTFHNFGLPIRF* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 244 - -
Lan1g1569 643 Pfam WD domain, G-beta repeat 293 328 IPR001680 GO:0005515
Lan1g1569 643 Pfam WD domain, G-beta repeat 211 242 IPR001680 GO:0005515
Lan1g1569 643 Pfam WD domain, G-beta repeat 334 370 IPR001680 GO:0005515
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 330 - -
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 380 IPR001680 GO:0005515
Lan1g1569 643 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 642 - -
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 373 - -
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 244 IPR001680 GO:0005515
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 330 IPR001680 GO:0005515
Lan1g1569 643 PANTHER WD REPEAT DOMAIN 44 1 642 IPR040324 -
Lan1g1569 643 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Lan1g1569 643 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Lan1g1569 643 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Lan1g1569 643 SMART WD40_4 291 329 IPR001680 GO:0005515
Lan1g1569 643 SMART WD40_4 204 243 IPR001680 GO:0005515
Lan1g1569 643 SMART WD40_4 427 463 IPR001680 GO:0005515
Lan1g1569 643 SMART WD40_4 464 505 IPR001680 GO:0005515
Lan1g1569 643 SMART WD40_4 373 412 IPR001680 GO:0005515
Lan1g1569 643 SMART WD40_4 332 371 IPR001680 GO:0005515
Lan1g1569 643 Gene3D - 201 537 IPR015943 GO:0005515
Lan1g1569 643 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 514 IPR001680 GO:0005515
Lan1g1569 643 SUPERFAMILY WD40 repeat-like 205 508 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1569 Lan-Chr1 26424661 26430104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1569 192 394 Acyl Lipid Metabolism Gene Families AT3G18860 26.316 1.85e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1569 K20241 - gmx:100819135 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0682 12 13629032 13635285 Lan1g1569 1 26424661 26430104 LSH
Lan1g1569 1 26424661 26430104 Lan15g0536 15 12442705 12447456 PCT
Lan1g1569 1 26424661 26430104 Lan3g0721 3 13203804 13208768 PCT
Lan15g0536 15 12442705 12447456 Lan1g1569 1 26424661 26430104 PCT
Lan3g0721 3 13203804 13208768 Lan1g1569 1 26424661 26430104 PCT