Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1566 ATGTCTTCTTCTTTCTTCTTCCTCTCATTTCTCTTCTTCCTCACCCTCTCTTCCGCCGCCAATCCACCACCCACCACCACCGCCACGCCGGTGATCCAACAAGCTTGTAAAGTCACAAACTTCTCCCAACAATGCGAGTCCACTCTCTCCCAATCCAAGCTCCCACCCAACCCAACCTCTCTCCAGCTCCTCCAAGCCGCCTTGGCTGCCTCCTCCTCCAACCTCGCCACTGCCCTAACCATGATCAAGTCCATCCTCGACGCCTCCGCTGACAGCAAAAACCGCACCCTCGCCGCCACTATCTGCCTAGAGGTTCTCCAAAACTCCAAATACCGCATTTCTCTCGCCAACTCTTCCCTTCCAAGTGGCAAGACCAAAGACGCACGCGCCTGGCTCAGCGCCGCACACTCCTACACCTACGATTGCTGGTACGCACTCAAGAACGCTAACGATACAAAGCAGGTTGGTGAAACGATGTCGTTAGTCAACTCCATATCTATTCTCAACAGCAACGCGCTCAGCATGGCGTTTAACTACGACGCGTTTGGGAACAATATCGCGTCGTGGAAACTGCCGAAGACAGAGCGTGACGGGTACTGGGAGAGATCCGGGACATGTGGCGGGTCAGGATCTGTGACCGGCTTGCCGGATAAGTCGAAAGCGGACGTTACTGTTTGTAAGGGAGGAGGGAGTGGGTGTTTGAAGACGATTCAAGAAGCGGTTAATAAGGCACCGGATAACGGCGGTGAGGGAAAGAAGTTTGTGATATATATAAAGGAAGGGGTTTATGAAGAAACTGTTAAGGTTCCGTTAGAGAAAGGGAATGTGGTGTTCTTGGGTGATGGTATAGGGAAGACGGTTATTACTGGCTCTGCGAGTGCGGGTCAACCTGGGGTCTCCACCTACACCTCAGCCACAGTTGCTGTTCTTGGTGATGGATTCATGGCAAAGGACCTTACAATCCAAAACACAGCAGGTCCTATTACTCATCAAGCAGTGGCATTCAAATCAGACAGTGATCTTTCTATCATTGAGAATTGTGAATTCTTAGGAAACCAAGACACCCTTTATGTTCATTCCCTGCGCCAATTTTACAAATCATGCTATATCCAAGGCAATATAGACTTCATCTTTGGCAATTCTGCTGCAGTTTTTCAAGACTCTGAAATCCTACTTCGTCCAAGACAAATGAACCCTGAGAAGGGTGAGAGCAATGCAATCACAGCACATGGTAGAACAGACCCTGCACAAGCAACAGGGTTAGTTTTCCAGAACTGTTTGATCAATGGAACTAAGGAATATTTGGCATTATATCATAGCAACCCTAAAGTGCACAAGAATTTCTTGGGTAGGCCATGGAAAATGTACTCTAGAACAGTTTTCATTCATTGTAAGATGGATGCTATTGTTACACCTCAGGGTTGGTCACCATGGCAAGATGACTTTGCACTGAAAACACTTTACTATGGTGAGTTTGAGAATTCAGGACCTGGTTCTGGTGTGTCTCAGAGGGTGCCATGGAGTAGCAAAGTTCCTCCTGAGCATGTGTTGGCATATTCAGCACAGAATTTCATTCAAGGAAATAGTTGGATTCCACCATCTCTATTATCATCTAAGGTTGATAAGAGTAATCAAGGGATTGGTAGGAATTATAAGTAA 1659 0.4744 MSSSFFFLSFLFFLTLSSAANPPPTTTATPVIQQACKVTNFSQQCESTLSQSKLPPNPTSLQLLQAALAASSSNLATALTMIKSILDASADSKNRTLAATICLEVLQNSKYRISLANSSLPSGKTKDARAWLSAAHSYTYDCWYALKNANDTKQVGETMSLVNSISILNSNALSMAFNYDAFGNNIASWKLPKTERDGYWERSGTCGGSGSVTGLPDKSKADVTVCKGGGSGCLKTIQEAVNKAPDNGGEGKKFVIYIKEGVYEETVKVPLEKGNVVFLGDGIGKTVITGSASAGQPGVSTYTSATVAVLGDGFMAKDLTIQNTAGPITHQAVAFKSDSDLSIIENCEFLGNQDTLYVHSLRQFYKSCYIQGNIDFIFGNSAAVFQDSEILLRPRQMNPEKGESNAITAHGRTDPAQATGLVFQNCLINGTKEYLALYHSNPKVHKNFLGRPWKMYSRTVFIHCKMDAIVTPQGWSPWQDDFALKTLYYGEFENSGPGSGVSQRVPWSSKVPPEHVLAYSAQNFIQGNSWIPPSLLSSKVDKSNQGIGRNYK* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1566 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 178 IPR035513 -
Lan1g1566 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 174 IPR006501 GO:0004857
Lan1g1566 552 SUPERFAMILY Pectin lyase-like 219 535 IPR011050 -
Lan1g1566 552 SMART PMEI_2 27 175 IPR006501 GO:0004857
Lan1g1566 552 PANTHER PECTINESTERASE 22 534 - -
Lan1g1566 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 175 IPR035513 -
Lan1g1566 552 Gene3D - 217 540 IPR012334 -
Lan1g1566 552 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Lan1g1566 552 Pfam Pectinesterase 222 528 IPR000070 GO:0030599|GO:0042545
Lan1g1566 552 PANTHER PECTINESTERASE 22 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1566 Lan-Chr1 26391145 26396709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1566 24 530 Carbohydrate Esterase AT5G09760 61.719 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1566 - - adu:107480269 750.355