Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1553 ATGGAAGATGATCATAAGAACCATATTAGTTTGCCAAATGGTTTCAACACTGGAAGCCCTAAAAGTCCATGCTTAAAAACAAACAACGACAATAACAACAACCACACTAGCAATAAGGAACAAGATCGTTTTCTCCCTATAGCAAATGTTGGTAGAATCATGAAAAAAATGATTCCAGCCAATGGGAAAATCTCAAAGGAGGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTTATCAGTTTTGTAACAGTTGAAGCATCTGATAAATGTCAAAGAGAGAAGAGAAAAACGATCAATGGCGATGATATTATATGGTCCATCACAACCTTAGGTTTTGATGATTATGTGGAACCATTAAAAAACTACCTTCTAAAATATAGAGATATAGAAGGAGAGAAACTTAATGTTCCAAAGCAACAACATTCTGAACAAAGGGTACAACAACATCAATATCATAACCAAGATGAAAATAATCAATCACTAAATAGTGTATATTCCTCAGCAAATCTCATTTCTCAATATCCCTATGTGGCCACGGATCAGTCATTTTCACTATCATTCTCACCAAATTCGATTCAGAAACAGTTACAGCCACAAGAACAAATTGATTCAATGGGGCATTGGTATGAGTAA 636 0.3475 MEDDHKNHISLPNGFNTGSPKSPCLKTNNDNNNNHTSNKEQDRFLPIANVGRIMKKMIPANGKISKEAKETVQECVSEFISFVTVEASDKCQREKRKTINGDDIIWSITTLGFDDYVEPLKNYLLKYRDIEGEKLNVPKQQHSEQRVQQHQYHNQDENNQSLNSVYSSANLISQYPYVATDQSFSLSFSPNSIQKQLQPQEQIDSMGHWYE* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1553 211 MobiDBLite consensus disorder prediction 10 43 - -
Lan1g1553 211 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 6 200 - -
Lan1g1553 211 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Lan1g1553 211 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Lan1g1553 211 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Lan1g1553 211 MobiDBLite consensus disorder prediction 1 43 - -
Lan1g1553 211 Gene3D Histone, subunit A 31 166 IPR009072 GO:0046982
Lan1g1553 211 MobiDBLite consensus disorder prediction 138 157 - -
Lan1g1553 211 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 107 IPR003958 -
Lan1g1553 211 MobiDBLite consensus disorder prediction 141 157 - -
Lan1g1553 211 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 200 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan1g1553 211 SUPERFAMILY Histone-fold 41 162 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1553 Lan-Chr1 26106606 26107452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1553 14 209 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.906 1.44e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan1g1553 CBFD_NFYB_HMF 8.7e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1553 K08065 - gmx:100778216 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1885 1 34027075 34027894 Lan1g1553 1 26106606 26107452 LSH