Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1547 ATGGGGAGCAAGAGCGGTAACAAAGCACTGAGCCTCAACGATAGTCACTATCGCTACCTTCAACGTCTTCCCACAAATCCTTCTCCCCCAAACCCTAACCCTAACTCTCACTCTTCTGCATCTGCAATGAAAAACGATGAAACCATTCCTCATTTCTCTGCAATCACCGACTTCGATTCTCCTTCTCCGATCGAGGAAGAAAACAAGGTGAAGACAAAGGTGAAAATGGAAGGGCGACGGCGTCTCTGTAAGGTTGCTTATTCGGACAAAGTCGGCGATGGTGCTGGTAAGAAGGTGGCGGTTGATGAATCCAACGCTGATCATGTCATCAGTCTGGATACGCCTGTTAAGGTAAAGGAGAGTAAGGATGGGAGTGAAATTAGGGATATTTTGAATGATCTGAGCTCCAGGTTTGAATTGCTCTCTGTTGAGAGGACCCGAGTCAAACAAAAAGAACCTTGTGTAGATGAGGTAGTGGAGTATAGAAGTGCAGGTTCTTCGTTTTCTCCCGAACAAGATCTCCATAAGGGTACTACTAACAATGCTAAGGGTAGTAATAATCCTGCTGCTGCTATTGAGTATGTGGAAGATGATGACTCTGATGATTGTGTTCAAGTGTTGGATCATTTCGAGCCACAAAATGATGATGGTTCCATAAAATTAGCAGATCCAAAGTATACATTCAACTTGCCTAGTAAAATTGGAAAAATGTTGTATCCCCATCAGCGAGAAGGGTTGAAATGGCTCTGGTCTTTGCATTGTTTGGGAAAAGGTGGAATATTGGGTGATGATATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTTGCTGGTCTGTTTCATTCCCGTCTAATTAGGAGGGCAATGGTGGTGGCTCCCAAAACTTTGTTGCCTCATTGGATTAAAGAATTATCGGTTGTTGGTCTCTCTGACAGGATAAGAGAATACTATGGAACTTCGACGAAAGCCAGAGAATATGAACTTAAGTCCATACTTCAGGATAAAGGTGTTCTTCTTACGACCTATGACATTGTCCGCAACAATACTAAATCTCTAAGGGGGAATAATTATTTTGAAGAGGATGATAGTGAAGATGATCCAACTTGGGATTATATGATACTTGATGAGGGACATCTTATAAAGAATCCGAGCACACAAAGAGCTAAAAGTTTACTCGAAATACCTAGTGCCCATCGCATTATTATCAGTGGCACGCCATTGCAAAATAACCTTAAGGAGTTATGGGCCTTGTTCAATTTCTGCTGCCCTGAATTACTTGGTGACAATAAATGGTTCAAAGCCCAATTTGAAATGCCAATACTTCGTGGAAATGATAAAAATGCAACTGACAGAGAGCAACGTATTGGTTCAGCTGTAGCGAAGGAGCTAAGAGATCGTATTCAGCCATACTTCTTAAGACGTCTAAAGAGTGAGGTTTTCAATCAAGATGATGAGAAATCAACAGCAAAGCTTTCTCAGAAACAAGAGATTATTGTGTGGCTTCGATTGACCAATGTTCAGCGACATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCATTGGCTGCCCTTACGATTCTGAAGAAAATATGTGATCATCCACTTTTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGTTGGACTCAATGCTAAAGCCAGAAGAGGTTAATATTGCAGAAAATTTAGCGATGCATATCGCAGATGTTGCTGACACAGATAAATTTAAAGATGAGAATGATGTATCGTGCAAAATTTTGTTTATTATGGCATTATTGGATAATTTGATCCCAGAAGGACATAATGTGCTAATCTTTTCTCAGACTCGCAAAATGCTTAATCTTATTCAGGAATGTCTAATATCTAAAGGTTATGACTTTCTACGAATTGATGGTACAACAAAACCAAGTGACAGACTAAGGGTTGTTAATGATTTCCAAGAAGGCCATGGAGCTCCTATATTTCTTTTGACATCTCAAGTTGGTGGCTTAGGACTGACACTCACAAGAGCAGATCGTGTAATTGTAGTGGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCATATCGCATTGGTCAAACGAAAGATGTTCTTGTGTATAGACTGATGACATGTGGAACTGTGGAGGAAAAGATTTACAGAAAGCAGGTATATAAAGGAGGATTATTCAAATCCGCTACTGAACATAAAGAACAAATCAGATACTTTAGCCAACAGGATCTTAGGGAGCTTTTCAGAATCCCAAAAGAGGGATTTGATGTATCTGTTACCCAACAACAATTGGATGAAGAGCATGATCGTCAACACACAGTGGACGATTCTCTCAAGGCACATATACAATTCTTGAAAAGTCTAGGCATAGCTGGAGTTAGTCATCATAGTCTACTCTTTTCCAAGACTGCACCAGTTCAAGCTGCTCTTGAGGATGATGAAGTGGCAAGGATTCGAGGGGCTAAATATGTTGGAACTTCAGTGTCTTCTTCTTCTTCACGTGAACATATTTCTGATGGAGCTGAGTTTGCATTTAATCCGAAGGATGTGAAGTTGAGCAAAAAAGGCTCTTCCCCCAGTAATGCTGCTGAACTGACCAAGTCAGATATTAAGGATAAAATTAACCGGCTCTATCAAACACTCTCAAATACGGCAATGATTTCTAAGTTACCTGATAAGGGAGAGAAACTACGAAGAAGGATTGGAGAGCTGAATATAGAACTCGCTAACCTGAAGAAGGAAGAAAGTAGTGTAATTGATTTGGATGATTTTAGTAGCGAATTTGAAAGAGTGTTGAATGTATAG 2841 0.4065 MGSKSGNKALSLNDSHYRYLQRLPTNPSPPNPNPNSHSSASAMKNDETIPHFSAITDFDSPSPIEEENKVKTKVKMEGRRRLCKVAYSDKVGDGAGKKVAVDESNADHVISLDTPVKVKESKDGSEIRDILNDLSSRFELLSVERTRVKQKEPCVDEVVEYRSAGSSFSPEQDLHKGTTNNAKGSNNPAAAIEYVEDDDSDDCVQVLDHFEPQNDDGSIKLADPKYTFNLPSKIGKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRAMVVAPKTLLPHWIKELSVVGLSDRIREYYGTSTKAREYELKSILQDKGVLLTTYDIVRNNTKSLRGNNYFEEDDSEDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKAQFEMPILRGNDKNATDREQRIGSAVAKELRDRIQPYFLRRLKSEVFNQDDEKSTAKLSQKQEIIVWLRLTNVQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGLDSMLKPEEVNIAENLAMHIADVADTDKFKDENDVSCKILFIMALLDNLIPEGHNVLIFSQTRKMLNLIQECLISKGYDFLRIDGTTKPSDRLRVVNDFQEGHGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKSATEHKEQIRYFSQQDLRELFRIPKEGFDVSVTQQQLDEEHDRQHTVDDSLKAHIQFLKSLGIAGVSHHSLLFSKTAPVQAALEDDEVARIRGAKYVGTSVSSSSSREHISDGAEFAFNPKDVKLSKKGSSPSNAAELTKSDIKDKINRLYQTLSNTAMISKLPDKGEKLRRRIGELNIELANLKKEESSVIDLDDFSSEFERVLNV* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1547 946 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 598 757 IPR001650 -
Lan1g1547 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 777 IPR027417 -
Lan1g1547 946 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 250 425 IPR014001 -
Lan1g1547 946 Pfam SNF2-related domain 241 545 IPR000330 GO:0005524|GO:0140658
Lan1g1547 946 Gene3D - 216 497 IPR038718 -
Lan1g1547 946 Coils Coil 906 926 - -
Lan1g1547 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 475 IPR027417 -
Lan1g1547 946 MobiDBLite consensus disorder prediction 166 186 - -
Lan1g1547 946 Pfam Helicase conserved C-terminal domain 595 707 IPR001650 -
Lan1g1547 946 PANTHER OS04G0692700 PROTEIN 227 828 - -
Lan1g1547 946 CDD SF2_C_SNF 587 718 - -
Lan1g1547 946 MobiDBLite consensus disorder prediction 1 24 - -
Lan1g1547 946 PANTHER SNF2/RAD54 FAMILY MEMBER 227 828 - -
Lan1g1547 946 SMART helicmild6 624 707 IPR001650 -
Lan1g1547 946 Gene3D - 498 796 IPR027417 -
Lan1g1547 946 SMART ultradead3 233 436 IPR014001 -
Lan1g1547 946 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1547 Lan-Chr1 26026179 26033323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1547 593 760 RAD5 or RAD16-like Gene Family AT5G22750 35.119 1.26e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan1g1547 SNF2_N 1.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1547 K20093 - gmx:100779283 1343.56