Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1540 ATGAAGGAAACAGATCAAATGAGAAAAGAAAATGAGTCAGAAATGGTGAAGGAAGAAGTTATCAATGATGGTACATCAAGTGTTGAGGCTGGGGAATTAGAATCTCACTCTTGCATTAGCCTGGAGAGGGATGCAAGCTTGCCAACCTGTCGCGTGTGCCAATGTGTTGAATCTGATAAAATGGGAGATGCCGCGCTAGAATTGTTGGGCATCTCTCCGGTTATAGAAGTGTGTAAAAGCAATGAGGAACTTAAGTCTGATGATGGTGATGAAATTCCAAAGCAAATCCCTCTGGACAGAAATGTCGAAAACAACTCGAGGGTGGTGGAATTTGTTAGCCCTGATGGTGAGGTTTTCATTTGTAAAAGTGATTTGGAAAGTGATTTGTCTCCTCAAGATACATTAATTGAGCTCGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTCCACTATGCTTGTGCACTCAAATGGTTTGTCAGCCATGGTTCTACCATTTGTGAAATATGTGGACATATAGCAAAAAATATCAGAATTTCTGACTTCAATAAGGTTATTAGTTATTTAAAAGAGTATGAATCATTAAGGGAAGGAATTGCCAACGGTAATCCTGGTCCTGCACATGTTCATTCTAATACTGGTGTGGATCCTGATGCTGTGGCTTTTATCAGTAGGCAGTGGCTAAGTGAGATTGCACTATGGTTTTGTCCTCATAATAACAGTAACAATAATAACAATAGCATCATGGAAACATTTTCGCAGGCTATTTATGAGCAGCCTTCAAATATCGTAACTGAAGAGGCTGGCCCTGCTACGCATCCTGCATTGAAATGGGCTGCGGAAGGTACAGGGATCCTGCTTGCTACTGGGCTGCTTACTATCACCCTGGTGTGGTTCATAGCTCCTCGTGTTGGAGAGAAAACTACGAAAAGTGGCCTTCACATCATATTTGGATGTGTCTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGATTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACACATGGTGCAACCCATACAACTGATACATTGGATATAACGTGA 1128 0.4149 MKETDQMRKENESEMVKEEVINDGTSSVEAGELESHSCISLERDASLPTCRVCQCVESDKMGDAALELLGISPVIEVCKSNEELKSDDGDEIPKQIPLDRNVENNSRVVEFVSPDGEVFICKSDLESDLSPQDTLIELGCCCKNDLALVHYACALKWFVSHGSTICEICGHIAKNIRISDFNKVISYLKEYESLREGIANGNPGPAHVHSNTGVDPDAVAFISRQWLSEIALWFCPHNNSNNNNNSIMETFSQAIYEQPSNIVTEEAGPATHPALKWAAEGTGILLATGLLTITLVWFIAPRVGEKTTKSGLHIIFGCVCALTVVVFFRFFVLTRIKYGPARYWAILIVFWFLVFGIWASRTHGATHTTDTLDIT* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1540 375 MobiDBLite consensus disorder prediction 1 19 - -
Lan1g1540 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 180 IPR013083 -
Lan1g1540 375 SUPERFAMILY RING/U-box 135 172 - -
Lan1g1540 375 MobiDBLite consensus disorder prediction 1 27 - -
Lan1g1540 375 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 367 - -
Lan1g1540 375 ProSiteProfiles Zinc finger RING-CH-type profile. 113 176 IPR011016 GO:0008270
Lan1g1540 375 PANTHER ZINC FINGER, RING-CH-TYPE 7 367 - -
Lan1g1540 375 Pfam RING-variant domain 120 169 IPR011016 GO:0008270
Lan1g1540 375 SMART ringv_2 120 170 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1540 Lan-Chr1 25961398 25967516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1540 7 358 C3H Transcription Factor Family AT5G08750 56.787 3.25e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1540 - - lang:109358685 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0709 12 13876125 13881669 Lan1g1540 1 25961398 25967516 LSH