Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1528 ATGCCTCTTTTAAGGAGAAAGCCATCTGCTTTGGCCGAGCCACCGAAGGATTTGAAGCCAGATGAGCTTGTTTACCAAATTCGATTTACAAAAGAAATATTTCGTGATTATCATGAATACTTGAACTTTTTAAATCTATATCGGCAAAGGATTTGGATGTGTAAAGTCTCTGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAACGTGCCACCGAGAAAGTTCAACAGTTTCCTAAAGAATTAACGGCACCTGCTCTACAGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTCGCTGATTCTATTAATGAAAAATTGCTGGGACATTTGTTTGTGGGTGCTGAACTGTTTGTGAAAAAGGATGATGGAGTGTATCCATGCAAAATATTGAAAGTCATCCTGGAGGGAGTTGAAAAATGCCGTTATGAGGTAGTTTGGCTCAACAAGGACAAGAATATAACGGAAACAACATATGTCTGTGCGGAAGATTTGGTGCAAAAGAAGCCTCTTTTTAGTAGAAATATTTTGAAGTCTTTTATCCGGGAGTCCACATACCGGAATGCCCCTTGGGTTTTACATGAAGAACTGGCACAAAAACATGGAATCTCAACTGACATTCCCGAGGTGTTACGAGGAAGGGTTTTCTTCAAAAATGGAATTTTAACCTGCTCCAAAAAAAGAAAAAATGAGGAATCAATGGAGGAAACTGAAATCAGCAACAAAAGGAAGAATGTGGATTGTTCTGCCCAAAAGGAAGGAAATGACCAACACATAGACGAGCCAATCAAATATCCAATTGATGATCTATTGGTGAAGCCTGGCCCAGATGATCCTGTTTTCACTACTCGTCCTTCTCCTTCGAGAGACTTTAATATTCCAATGGATTGTGTAGGAGATCTCTTAATGATTTGGGATTTTTGTACTTCTTTTGCCAAACTGTTGCATCTGTGGCCCTACTCTCCAGAAGATTTTGAAAATGCAATACGCCATAGGGAAAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTCTTTCGTGTTCTCATCAATGATGACGGAGAATACTCTACAGCCATAAAGAAAAGAAGATCGAAGTATAAGATTACAATGATTAATTGGTCAGAGTATTTATCCGAATTTATAGAGATGATCAATATTCCTGGACTACACCAATATGAAGCTACCATTAAACGGGGACAATATGGTCTTGTAGATGTTAATGCTAAATTAGAAATCTTATCGGAATTGGTTAATCGAGTCCTTGAAACAGGAATTTTCAGGGGGGAAATGGATAAACTTATTGAAGAGCGACAGGTACTTGGGGCCTCTAGAAGGGAAGAGGCACTGGAAGATGGCAGGAAAAGAAGGAAAAAAAAGGAGCAGTTGAAAGCTGGGCCAGAAAGCAATGGAGTTGTGGATGGAAATCATCTGAACAATGCAAGTGTCTCAACAAACAATAATCATGGCATGCAGAATGGAGACGTGGGAGAGAAAAGAAACGGAGAAATCAAACCATCTAGGAATGATACACCGTGTAGAAGTGGGATCAAACATTTAAATCCTGCTTCAAAAAAGACACAGAAGAAAGTGTCTTCAGAGGTGGAAGAACCGATAGAACATGGAAAAGTTGTATCCAGTAAGAAATTACAGAAACAATTGAAGGGTGATAAGGATCCATCAGAGAAGAATTGTTCAGAACAAAGGAGAGAATATTTTGAACGGGAGATGGACAAACGGTTAATTAGGAGAAGCCCATTAGGTAAGGACAGAGATTATAATAGGTATTGGTGGTTCCCTCGTGATGGGAGGCTATTTGTTGAAAGTTCTGATTCGAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGGTTGATGCACTGATGGGTTCACTGAATTGCAAGGGTGAGAGGGAAAGGGCACTGCAAAAACAATTGGGAAAATATTATAAACGTATATGCTCAGAGCTCCAGAAAAGATCGAAGGATTTGATGCACAAGGATGAAGTGGATGAGTCCGTGGTTCGAAGGTCTACTCGTGTTCGAGCTCCACCTCGGCAAAACCCTGCTAATGCATTCCTCAGATATGTTAACAAGTGGAAGGAAGAGTAG 2124 0.404 MPLLRRKPSALAEPPKDLKPDELVYQIRFTKEIFRDYHEYLNFLNLYRQRIWMCKVSGKTGLTYEEALVSEQRATEKVQQFPKELTAPALQIIQYSMLPLKDLADSINEKLLGHLFVGAELFVKKDDGVYPCKILKVILEGVEKCRYEVVWLNKDKNITETTYVCAEDLVQKKPLFSRNILKSFIRESTYRNAPWVLHEELAQKHGISTDIPEVLRGRVFFKNGILTCSKKRKNEESMEETEISNKRKNVDCSAQKEGNDQHIDEPIKYPIDDLLVKPGPDDPVFTTRPSPSRDFNIPMDCVGDLLMIWDFCTSFAKLLHLWPYSPEDFENAIRHRESNVVLLVESHAALFRVLINDDGEYSTAIKKRRSKYKITMINWSEYLSEFIEMINIPGLHQYEATIKRGQYGLVDVNAKLEILSELVNRVLETGIFRGEMDKLIEERQVLGASRREEALEDGRKRRKKKEQLKAGPESNGVVDGNHLNNASVSTNNNHGMQNGDVGEKRNGEIKPSRNDTPCRSGIKHLNPASKKTQKKVSSEVEEPIEHGKVVSSKKLQKQLKGDKDPSEKNCSEQRREYFEREMDKRLIRRSPLGKDRDYNRYWWFPRDGRLFVESSDSKEWGYYSSKEEVDALMGSLNCKGERERALQKQLGKYYKRICSELQKRSKDLMHKDEVDESVVRRSTRVRAPPRQNPANAFLRYVNKWKEE* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1528 707 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 587 653 IPR028941 -
Lan1g1528 707 MobiDBLite consensus disorder prediction 450 572 - -
Lan1g1528 707 MobiDBLite consensus disorder prediction 534 572 - -
Lan1g1528 707 SMART testlast3 299 360 IPR018501 -
Lan1g1528 707 ProSiteProfiles DDT domain profile. 299 360 IPR018501 -
Lan1g1528 707 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Lan1g1528 707 Pfam DDT domain 300 357 IPR018501 -
Lan1g1528 707 MobiDBLite consensus disorder prediction 478 499 - -
Lan1g1528 707 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Lan1g1528 707 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 705 - -
Lan1g1528 707 MobiDBLite consensus disorder prediction 450 470 - -
Lan1g1528 707 Coils Coil 701 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1528 Lan-Chr1 25751963 25759897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1528 588 677 Homeobox Transcription Factor Family AT1G28420 36.893 1.61e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lan1g1528 WAC_Acf1_DNA_bd 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1528 - - gmx:100789956 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1896 1 34183035 34190733 Lan1g1528 1 25751963 25759897 LSH