LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g1506	ATGCCTTTTCAAATAATGGATCAGAAGGGTGTTTCTGCCTCATCCAAATTCTTTGATGACATTTCCTGTCATTCTGAGAGCAATGTTGGATTGCAGAAACAAAAATCCATTCATGATCAATACCAACAAGGAAAGAATGGAATGGTGGCATCACCAGGCAGCATTTTAATTGATTCAGCATCCCTTGGTATAAATGCAAAATCTGGCTCGCGATTGTCACAGACTAGTCTATCTGGTGAGACTACGGAAAAGCTACATTTTGGTGGAGAAGAAGGCAATGTTGATGTTTTGAATGATTTCAAGGAATCATTGCATTATCATCCCATATCATGGTCTGGTGGGCATATGCAGACAGCACCTTCCTCATATGGTTCAATTGGGAACAAGATTGCCACCAACGTTGTTCCTTATGAAAGTAGTCTATTCTCAAGCTCTTTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTAATGGGGAAAGATGCTCTGTCTGATCAGTCCATCAGTGTTGGTTCCCTTCCTCAGGAAGAACCTTATAAATCTATTGAAGAAGAAATTATCGGGAATCTCCTTTCTGATGAAGATGATCTGTTTTCTGGTGTCATTGATGAGTACGGATACAGTACTCATGCCAGAACAAATGACGACTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGCACATCTATATTCAGGAAAAGTAACAAGACGTTGGGGTGGAGATTCTGGTTTATATAGAGGTTCTAAAGGGAAACTTCCTTTTGGTGAACAACCTTGTAGAACACTTTTTGTTCGAAACTTTAATAGCAATGTAGAAGACAATGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATGTATACAGCCTGTAAGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTTAGAGCAGCACAAAATGCAATGCAAGCACTTCAAAACAGGCCATTGAGGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGCCACGGGACACTGATGCTATCTGGTCTTGATTCATCTGCTTTAAATGACGAGCTTAGACGGATTTTTGGGTTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATCATCTCAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCATTCACTGAACAGGATTGGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTCTGATACAGCAGTCTCATAAGGGGCAAGATGAACCAAGTTTTGGTCAAAGTATTATTGACAACTTATCATTAACACAAAAGGTTGGATCTGGCTGCTTGGAAAATGGATATAATCAGGGTTTTCAATCTGCAATGCGGCAACCTTTGAATGCATTTGTTGATAATGCATTCTTTCGAGCGAATTCTAGCCTTCACAACACAGTAGGAGGGGCATCTGCTGCAAAAGTTTCCGGCATCCGTGAGTCCAGTGACTTTGCTGATGGAGTGAAATTTGCATCTAATCCGAGATTTCATCCTCATTCCTTACCTGAGTATCATGGTAGTTTAGCTAATGGTAGTCCTTATAGCTTTTCAAGCACCATTAGCAACATGGCCAGCAATACGGGTATTGCAACAACAGAAGCCTCTGACAGGAGGCACATCCAGGGAATGGGCTCAACTAGGAATGTAGCAGAGGTTAATGCAGGAGGAAATGGAATCCATGCGCATAATGGGCTTTATCATATGTGGAACAACTCCAGTTTGCATCAGCAACCTTCATCTGATGTCGTGCTCTGGCAGAAAACACCATCACTTGTTAATGGTGCTTGTGCTCCGGGCCTTCCACAGATGCCAAGCTTTGCCAGAACACAGCCTCAGATGCTGAGAAAACCACATATGGACCATTATGGAAAGGATGGTGTTAGCTTAGCAGCCACACTTTTTCTCATACATGCTCCAAGTGCTAGGCCACAAATCAGCATTTTGTATCTGTCTTCCCAGCTTTCTGGGTCTCTTTTTGCTGCTTTGTTACCTTGGGAACAAAGACTTCAAACTCTTCGACTGGTCTTTTCATTGCCCCTTCTCTCTCTTTTTTATTGCAGGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTCTATTTACCAATTGATTTCAGGAACAAATGTAATGTTGGCTATGCATTCATAAATATGATCGATCCTGCTCAAATTGTTCCTTTCTGCCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCGCTTGCGTATGCTCGAATTCAAGGAAAAGCTTCTCTTATTTCTCATTTCCAGAATTCAAGCTTGATGAGTGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATATGAAGCCATTCCCCGTAGGTGCCAATGTTCGAGTGAGACCTGGAAAATCTCGCACAGGCAGTAACGAGGAGAACAGCGGCCAAGGAAGTTCTTCAACTGTAGCAACTGGAGAAGAATCTGCGAAGGGAAAAGACTCTTCATTCAGCTCTGATTGA	2628	0.4163	MPFQIMDQKGVSASSKFFDDISCHSESNVGLQKQKSIHDQYQQGKNGMVASPGSILIDSASLGINAKSGSRLSQTSLSGETTEKLHFGGEEGNVDVLNDFKESLHYHPISWSGGHMQTAPSSYGSIGNKIATNVVPYESSLFSSSLSEMFSQKLRLMGKDALSDQSISVGSLPQEEPYKSIEEEIIGNLLSDEDDLFSGVIDEYGYSTHARTNDDFEDFDLFSSGGGMELEGDAHLYSGKVTRRWGGDSGLYRGSKGKLPFGEQPCRTLFVRNFNSNVEDNELKALFEQYGDIRTMYTACKHRGFVMISYYDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSALNDELRRIFGFYGEIKEIYEYPEMNHLKFIEFYDVRAAEAALHSLNRIGIAGKQIKLEPGHPSLIQQSHKGQDEPSFGQSIIDNLSLTQKVGSGCLENGYNQGFQSAMRQPLNAFVDNAFFRANSSLHNTVGGASAAKVSGIRESSDFADGVKFASNPRFHPHSLPEYHGSLANGSPYSFSSTISNMASNTGIATTEASDRRHIQGMGSTRNVAEVNAGGNGIHAHNGLYHMWNNSSLHQQPSSDVVLWQKTPSLVNGACAPGLPQMPSFARTQPQMLRKPHMDHYGKDGVSLAATLFLIHAPSARPQISILYLSSQLSGSLFAALLPWEQRLQTLRLVFSLPLLSLFYCRYTSKMLLVAIDEQCRGTYDFLYLPIDFRNKCNVGYAFINMIDPAQIVPFCQAFNGKKWEKFNSEKVASLAYARIQGKASLISHFQNSSLMSEDKRCRPILFHTDGPNAGDMKPFPVGANVRVRPGKSRTGSNEENSGQGSSSTVATGEESAKGKDSSFSSD*	876

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan1g1506	875	CDD	RRM1_MEI2_like	267	341	IPR034453	-
	Lan1g1506	875	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	269	333	IPR000504	GO:0003723
	Lan1g1506	875	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	354	419	IPR000504	GO:0003723
	Lan1g1506	875	SUPERFAMILY	RNA-binding domain, RBD	264	422	IPR035979	GO:0003676
	Lan1g1506	875	Gene3D	-	261	349	IPR012677	-
	Lan1g1506	875	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	2	648	-	-
	Lan1g1506	875	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	714	869	-	-
	Lan1g1506	875	SUPERFAMILY	RNA-binding domain, RBD	715	790	IPR035979	GO:0003676
	Lan1g1506	875	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	267	340	IPR000504	GO:0003723
	Lan1g1506	875	MobiDBLite	consensus disorder prediction	815	875	-	-
	Lan1g1506	875	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	352	425	IPR000504	GO:0003723
	Lan1g1506	875	SMART	rrm1_1	353	421	IPR000504	GO:0003723
	Lan1g1506	875	SMART	rrm1_1	268	336	IPR000504	GO:0003723
	Lan1g1506	875	Pfam	RNA recognition motif 2	714	799	IPR007201	-
	Lan1g1506	875	MobiDBLite	consensus disorder prediction	839	875	-	-
	Lan1g1506	875	Gene3D	-	350	442	IPR012677	-
	Lan1g1506	875	CDD	RRM3_MEI2_like	714	791	IPR034454	-
	Lan1g1506	875	PANTHER	RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	2	648	-	-
	Lan1g1506	875	PANTHER	RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	714	869	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g1506	Lan-Chr1	25431181	25439316	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g1506	265	448	Eukaryotic Initiation Factors Gene Family	AT1G71770	24.365	3.49e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g1506	-		-	gmx:100797893	884.404