Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1502 ATGCTATTCGCGAAGCTCGATGATTCTCCAATGTTTCGGCAACAGCTTCAGTGCTTGGAGGACGGTGCAGATTCATTACGTACTAGATGCTGGAAATTCTACAAAGAATGCAGAAAATATACGGATGGGCTTGGAGAGGTATATGATAGGGACATCGCATTTGCAAATGCCCTTGAAAATTTTAGAGGAGGGCATAGTGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATATACTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCACAGGAAGCTCGTAAGCGTTTTGACAAAGCTTCCCTTGTGTATGACCAGGCACGTGAAAAATTTATGTCACTGAAGAAAAGCACTAAGATTGATGTTGCCACAGTAATAGAAGAGGAATTGCAGAATGCAAGAACCTCATTTGAGGAAACCCGTTTCATTCTGGTCAGTGCTCTTAATAACATTGAGGCCAAGAAAAAATTTGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTACATCAGATGGAACCTTTCCTTAGCGAGGTTTTGGATTATGTACAACAGTCAAGAGAAAGTTACAGTAAGGAGGAAGTTTCTCTTTATAGAAGAATGGAAGAGTACAAAAGACATGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGCCCTTATGGTTCTTCTCCTAGTGGAGACTCTGCACATCCTTTTTCTAGGATATCAAATGATGTGGTAGATGTAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATCATTAGACAAGGGTATCTTTCAAAACGATCTTCAAATTTGAGGGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGCCGAGGAACGCTGTACTACTATCGTAAACCGTGGAATGGGTCATATGGCAGCAATCAACCATCTGCACATAAAAACAGTGCCAATGAAAATGGTTCGGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTTGCACGTCATACAGTAAACTTGCTGACATCAACAATCAAGGTTGATGCAGATCAGACAGATTTAAGATTCTGCTTCAGGATTATTTCTCCAGCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGACTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACATTGGGAACGCCTCCCTCAGCTGACTCAGAAAACAGTGACCATTACTCTGCAAACAAGAACGATATGTTAGAAAGCTCTCTAGATGATGGCCAGACTGTGACTAACAAGTATGCATCCATGAATGTCTCCCCTAATCACCACTTACGTGCATCTAAAAGTATGCAGTTGCACAAACACAGTCTAAAAATTGAAAAGCCAATTGATATTCTTAGAAGGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCTGATTGGGCTTCCTTAAATCTTGGCATCCTTGTATGCATTGAATGCTCGGGTATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGGTCACTTACACTTGATGTGAAAGTCTGGGACCTCTCTGTCTTAACCATGTTTAAGTCGCTGGGCAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTGTTACATTCAACTGATGACATGCCTGATGGTTCATCCAAGGCCAACAGTGACATGCTACTTCATGCGAGAAAACCAAAACATGATGATTCTATATCATTAAAGGAGAGGTTCATTCACGCAAAGTATTCCGAGAAAATCTTTGTTTGCCGGACGAAGAAAAACGACCCTCCCCTTCCATTGGCACAACAGGTGAGGGAAAGCATCTATGCCAATGACAAGAAAGCAATATACCGGCACATTGTAAAGTCAGATATTGATGTCAATGCCATCGGTGGAAAAGCATTATCTGGTGAATCTTTCAACATGGCTTTTTCAAGTAATTCAGACATTTCTTCTCACAGTGAAAATCAGCTTATTGAGGACATACAAGATGGTTCCACTGTCCTTCACTTGGCATGTGAAACTGCTGACATTGGCATGGTGGAGCTGCTCCTACAGTATGGGGCAGATATAAATGCCTGTGATTCAAAAGGCCGGACACCGTTACATTGCTGTATTATCAGAGGGAACTCTGCAGCTGCAAAAGTGCTTATTATGAGGGGAGGCAATCCACATGTTGCAGATAAAGAAGGCAACACTCCTCTTAATCTTGCATCAGAAACCAGCTCAGTTGCCAATGAAATGGTTGTTCTCTTAACAAGCAAATGA 2340 0.4137 MLFAKLDDSPMFRQQLQCLEDGADSLRTRCWKFYKECRKYTDGLGEVYDRDIAFANALENFRGGHSDPHFVALGGPVMTKYTIALREISTYKELLRSQEARKRFDKASLVYDQAREKFMSLKKSTKIDVATVIEEELQNARTSFEETRFILVSALNNIEAKKKFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFLSEVLDYVQQSRESYSKEEVSLYRRMEEYKRHVYEESRLSLNGPYGSSPSGDSAHPFSRISNDVVDVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGTLYYYRKPWNGSYGSNQPSAHKNSANENGSGLLSRWLSSHYHGGVHDERSVARHTVNLLTSTIKVDADQTDLRFCFRIISPAKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGTPPSADSENSDHYSANKNDMLESSLDDGQTVTNKYASMNVSPNHHLRASKSMQLHKHSLKIEKPIDILRRVSGNDKCADCGKPEPDWASLNLGILVCIECSGIHRNLGVHISKVRSLTLDVKVWDLSVLTMFKSLGNLFANSVWEELLHSTDDMPDGSSKANSDMLLHARKPKHDDSISLKERFIHAKYSEKIFVCRTKKNDPPLPLAQQVRESIYANDKKAIYRHIVKSDIDVNAIGGKALSGESFNMAFSSNSDISSHSENQLIEDIQDGSTVLHLACETADIGMVELLLQYGADINACDSKGRTPLHCCIIRGNSAAAKVLIMRGGNPHVADKEGNTPLNLASETSSVANEMVVLLTSK* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1502 779 Pfam Ankyrin repeats (many copies) 690 742 IPR002110 GO:0005515
Lan1g1502 779 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 98 778 - -
Lan1g1502 779 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 98 - -
Lan1g1502 779 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Lan1g1502 779 Pfam PH domain 274 407 IPR001849 -
Lan1g1502 779 SMART arf_gap_3 479 619 IPR001164 GO:0005096
Lan1g1502 779 Gene3D - 265 417 IPR011993 -
Lan1g1502 779 SMART PH_update 273 410 IPR001849 -
Lan1g1502 779 Pfam BAR domain of APPL family 93 212 - -
Lan1g1502 779 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Lan1g1502 779 SUPERFAMILY BAR/IMD domain-like 6 295 IPR027267 -
Lan1g1502 779 SUPERFAMILY ArfGap/RecO-like zinc finger 479 613 IPR037278 -
Lan1g1502 779 ProSiteProfiles Ankyrin repeat region circular profile. 721 753 - -
Lan1g1502 779 SMART ANK_2a 688 717 IPR002110 GO:0005515
Lan1g1502 779 SMART ANK_2a 721 750 IPR002110 GO:0005515
Lan1g1502 779 CDD ArfGap 482 606 - -
Lan1g1502 779 Pfam Putative GTPase activating protein for Arf 482 612 IPR001164 GO:0005096
Lan1g1502 779 Gene3D Arfaptin homology (AH) domain/BAR domain 4 98 IPR027267 -
Lan1g1502 779 Gene3D Arfaptin homology (AH) domain/BAR domain 99 229 IPR027267 -
Lan1g1502 779 Gene3D Arf GTPase activating protein 459 619 IPR038508 -
Lan1g1502 779 CDD PH_ACAP 275 412 - -
Lan1g1502 779 ProSiteProfiles PH domain profile. 272 408 IPR001849 -
Lan1g1502 779 CDD BAR_SFC_plant 15 194 IPR035670 -
Lan1g1502 779 SMART 5bar 5 197 IPR004148 GO:0005515|GO:0005737
Lan1g1502 779 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 620 IPR001164 GO:0005096
Lan1g1502 779 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Lan1g1502 779 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Lan1g1502 779 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Lan1g1502 779 SUPERFAMILY Ankyrin repeat 686 775 IPR036770 -
Lan1g1502 779 SUPERFAMILY PH domain-like 182 407 - -
Lan1g1502 779 Gene3D - 634 779 IPR036770 -
Lan1g1502 779 ProSiteProfiles Ankyrin repeat region circular profile. 688 719 - -
Lan1g1502 779 PANTHER CENTAURIN/ARF 98 778 IPR045258 GO:0005096
Lan1g1502 779 PANTHER CENTAURIN/ARF 1 98 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1502 Lan-Chr1 25354495 25365408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1502 483 612 C2H2 Transcription Factor Family AT4G21160 42.748 2.66e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1502 K12489 - gmx:100792517 1181.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1502 1 25354495 25365408 Lan1g1502 1 25354495 25365408 ECH