Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1500 ATGGCATCATCACCTTATGTTTCAATGAACAGAAGAGGAGAAATCAACAAAAACAACGGTGTTGGTGGTGGAGGAGAAGGTCAAAATGAAGCAGAACAAGCACTTTTCAGGGAACTATGGCACATGTGTGCAGGTCCTCTTGTAACTGTGCCTAGAGAAAGAGAGCTCGTATTCTACTTCCCTCAAGGCCATATTGAACAGGTTGAGGCTTCAACTAATCAGGTAGCAGATGAACATATTCCTGTATACGATCTACGTTCCAAGATCCTATGTCGGGTAACGAACGTCGTGCTGAAGGCAGAGCCGGATACAGATGAGGTCTTTGCACAGGTGACCTTAGTTGCAGAGCCAAATCAAGATGAGAATAAAGTTGAGAAAGAGGCGCCACCATTATTGCCGCCAAGGTTTCATGTTCGTTCTTTCTGTAAAACCCTGACTGCCTCTGATACAAGTACTCATGGAGGGTTTTTGGTTCTGAGGCGACATGCTGATGAATGCCTTCCTCCTCTGGACATGACAAAGGACCCACCTACTCAGGAATTAGTGACCAAGGACTTGCATGGGAATGAGTGGCGATTCAAACATATCTTTCGTGGTCACCCATCCAGGCACTTGCTACAAAGTGGTTGGAGTGTTTTTGTTAGCTTGAAGAGGTTGGTTGTTGGGGATGCATTTATATTTATAAGAGGTGAGAATGGGGAACATAGAGTTGGTGTTAGGCGTGCCATGAGGCAACAGAGAAACGTTCTATCGTCGATTATCTCCAACCATAGCATGCATCTTGGTGTACTTGCAAGTGCTTGGCATGCTGTCTCCACTAGGACAATGTTCACGGTTTATTATAAACCTTGGACCAATCTCACTGAATTTATTGTTCCATATGATCAGTACATGGAGTCTCTCAATATTAATTACACTATAGGTATGCACATTAAAATGAAATTTGAAGGTGAAGAGGCTCTAGAGCAAAGGTGTACTGGTACCATTGTTGGAATTGAAGATGTTGACCCCAAAAAATGGCCTGATTCCAAATGGAGAAGTCTTAAGGTGACCTTAGTTGCAGAGCCAAATCAAGATGAGAATAAAGTTGAGAAAGAGGCGCCACCATTATTGCCGCCAAGGTTTCATGTTCGTTCTTTCTGTAAAACCCTGACTGCCTCTGATACAAGTACTCATGGAGGGTTTTTGGTTCTGAGGCGACATGCTGATGAATGCCTTCCTCCTCTGGACATGACAAAGGACCCACCTACTCAGGAATTAGTGACCAAGGACTTGCATGGGAATGAGTGGCGATTCAAACATATCTTTCGTGGTCACCCATCCAGGCACTTGCTACAAAGTGGTTGGAGTGTTTTTGTTAGCTTGAAGAGGTTGGTTGTTGGGGATGCATTTATATTTATAAGAGGTGAGAATGGGGAACATAGAGTTGGTGTTAGGCGTGCCATGAGGCAACAGAGAAACGTTCTATCGTCGATTATCTCCAACCATAGCATGCATCTTGGTGTACTTGCAAGTGCTTGGCATGCTGTCTCCACTAGGACAATGTTCACGGTTTATTATAAACCTTGGACCAATCTCACTGAATTTATTGTTCCATATGATCAGTACATGGAGTCTCTCAATATTAATTACACTATAGGTATGCACATTAAAATGAAATTTGAAGGTGAAGAGGCTCTAGAGCAAAGGTGTACTGGTACCATTGTTGGAATTGAAGATGTTGACCCCAAAAAATGGCCTGATTCCAAATGGAGAAGTCTTAAGGTGAAATGGGATGAAACGTCTAACATACTTCTTCCTGATAGAGTTTCACCTTGGAAAATAGAGCCTGCTCATGCTTCTCCAGCTCTAAATCCTCTTTCAATGCCCAGACCTAAAAGGCATCGGCCTCTAGTGGTTCCGTCATCCTCAAATTCATCTCTTCTTATTCGAGAAAGAGTGTCATCTAAAGTGAGTGTAGACCATTTGCCCCCAAGTGTATATCCAACGGTCTTGCAAGGTAACTTGGTAGAAGGCAACAAGTCTGATAATGGTGAGAAGTCTGTTGTGTGGCCACATGCAGTAGATGATGAGAAGATTGATGATGTTTTTACTTCAAGAAAATATGGACCAGAGGGTTGGATGTTGATGGGGACACATGAAAAAAGTTCAGATATACTTTCGAGCTACGGGACTAATATAAATCTTTCTTCACATCCACTTTTGCTTAATCAAAGAAGCCATGTAGCTAACCCTACTAAGAAACATTTGTTGGATCATGAAGGAAAAGTTGATGTAATGGGTAGTCCATGGTCTGCCATGCCCTCTAGTTTATCACTCAACCTCTTGAACTCTAATGCAAAAGGTGTTCAGGGTGGTGATACAACTAATAAAGTTCAAGGGAATTTGAGGCATAGTGCATTTGGTGAATATGCTATGCTTCAACATGGTTATAAATTTGAGCATCCACGTGGAAAACTGATGATGCTACCGCCACCCACAACTCAATATGAGAATCCCTATTCTAGGGAACTGTTGCTGAAATCAATATCACCTAATACTTCTGAAGTTGCGAAACCAAAAGATGGAAACTATAAGTTATTTGGCTTCTCACTTCTCAGTAGCCCCACTAAATCGGGTACTTCTATGTCGCATAGAAATGTAGTCAATGAGCCACTTGGTGCCTTGCATCTTCCATCACACCTATATCGTACTTTCGAAAATGATCAGAAGTCTGAACATTCAAGGGGTTCCAAACCTGCGGATGTTGTAGTTGTTGCTGATGACCAGGAGAAGCTTTTACAGACTTCTCAGTCGCACTTGAAAAATGTTCAACCCAAACCACACAGCACCTCTGCTAGGAGCTGCACTAAAGTTCATAAGAAGGGGATTGCACTTGGTAGGTCTGTGGATCTTACAAAGTTCAGTGGCTATGATGAATTAATTGCTGAATTGGACCAACTATTTGAATTTGGAGGTGAATTAACTTCTCCAAAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTTTGTGCCATGGCCTGCAAAATGTCTATCTACCCAAAAGAAGATATCCAAAAAATGAGCCCTGGTACCCTAAGTTCAAAAAATGAAGAGAATCAGTCAGCTAGCGAAGGTGCAGATGGACAAGAGACTAATTGTCAGCCCCAACATCTAGCTTCTTATACCTGGTTTGGAAGTGGAGTGGAAAGGAGGGGACTCTCATAA 3249 0.4247 MASSPYVSMNRRGEINKNNGVGGGGEGQNEAEQALFRELWHMCAGPLVTVPRERELVFYFPQGHIEQVEASTNQVADEHIPVYDLRSKILCRVTNVVLKAEPDTDEVFAQVTLVAEPNQDENKVEKEAPPLLPPRFHVRSFCKTLTASDTSTHGGFLVLRRHADECLPPLDMTKDPPTQELVTKDLHGNEWRFKHIFRGHPSRHLLQSGWSVFVSLKRLVVGDAFIFIRGENGEHRVGVRRAMRQQRNVLSSIISNHSMHLGVLASAWHAVSTRTMFTVYYKPWTNLTEFIVPYDQYMESLNINYTIGMHIKMKFEGEEALEQRCTGTIVGIEDVDPKKWPDSKWRSLKVTLVAEPNQDENKVEKEAPPLLPPRFHVRSFCKTLTASDTSTHGGFLVLRRHADECLPPLDMTKDPPTQELVTKDLHGNEWRFKHIFRGHPSRHLLQSGWSVFVSLKRLVVGDAFIFIRGENGEHRVGVRRAMRQQRNVLSSIISNHSMHLGVLASAWHAVSTRTMFTVYYKPWTNLTEFIVPYDQYMESLNINYTIGMHIKMKFEGEEALEQRCTGTIVGIEDVDPKKWPDSKWRSLKVKWDETSNILLPDRVSPWKIEPAHASPALNPLSMPRPKRHRPLVVPSSSNSSLLIRERVSSKVSVDHLPPSVYPTVLQGNLVEGNKSDNGEKSVVWPHAVDDEKIDDVFTSRKYGPEGWMLMGTHEKSSDILSSYGTNINLSSHPLLLNQRSHVANPTKKHLLDHEGKVDVMGSPWSAMPSSLSLNLLNSNAKGVQGGDTTNKVQGNLRHSAFGEYAMLQHGYKFEHPRGKLMMLPPPTTQYENPYSRELLLKSISPNTSEVAKPKDGNYKLFGFSLLSSPTKSGTSMSHRNVVNEPLGALHLPSHLYRTFENDQKSEHSRGSKPADVVVVADDQEKLLQTSQSHLKNVQPKPHSTSARSCTKVHKKGIALGRSVDLTKFSGYDELIAELDQLFEFGGELTSPKKDWLIVYTDNEGDMMLVGDDPWPEFCAMACKMSIYPKEDIQKMSPGTLSSKNEENQSASEGADGQETNCQPQHLASYTWFGSGVERRGLS* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1500 1082 PANTHER AUXIN RESPONSE FACTOR 2 22 350 - -
Lan1g1500 1082 PANTHER AUXIN RESPONSE FACTOR 2 350 1054 - -
Lan1g1500 1082 SUPERFAMILY CAD & PB1 domains 948 1026 - -
Lan1g1500 1082 Pfam B3 DNA binding domain 141 242 IPR003340 GO:0003677
Lan1g1500 1082 Pfam B3 DNA binding domain 380 481 IPR003340 GO:0003677
Lan1g1500 1082 CDD B3_DNA 139 241 IPR003340 GO:0003677
Lan1g1500 1082 MobiDBLite consensus disorder prediction 1 15 - -
Lan1g1500 1082 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Lan1g1500 1082 MobiDBLite consensus disorder prediction 1 28 - -
Lan1g1500 1082 Gene3D - 942 1036 - -
Lan1g1500 1082 SUPERFAMILY DNA-binding pseudobarrel domain 377 509 IPR015300 -
Lan1g1500 1082 CDD B3_DNA 378 480 IPR003340 GO:0003677
Lan1g1500 1082 ProSiteProfiles B3 DNA-binding domain profile. 380 482 IPR003340 GO:0003677
Lan1g1500 1082 MobiDBLite consensus disorder prediction 1035 1061 - -
Lan1g1500 1082 SUPERFAMILY DNA-binding pseudobarrel domain 138 270 IPR015300 -
Lan1g1500 1082 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 350 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan1g1500 1082 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 350 1054 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan1g1500 1082 MobiDBLite consensus disorder prediction 1034 1061 - -
Lan1g1500 1082 Pfam Auxin response factor 267 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan1g1500 1082 Pfam Auxin response factor 506 588 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan1g1500 1082 ProSiteProfiles PB1 domain profile. 947 1029 IPR000270 GO:0005515
Lan1g1500 1082 SMART B3_2 380 482 IPR003340 GO:0003677
Lan1g1500 1082 SMART B3_2 141 243 IPR003340 GO:0003677
Lan1g1500 1082 Pfam AUX/IAA family 935 1032 IPR033389 -
Lan1g1500 1082 Gene3D - 304 366 - -
Lan1g1500 1082 Gene3D - 543 616 - -
Lan1g1500 1082 Gene3D - 138 243 IPR015300 -
Lan1g1500 1082 Gene3D - 377 482 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1500 Lan-Chr1 25293163 25299425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1500 13 373 B3 DNA Binding Superfamily AT5G62000 71.781 1.15e-178 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan1g1500 AUX_IAA 1.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1500 - - lang:109326450 2170.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1500 1 25293163 25299425 Lan1g1500 1 25293163 25299425 ECH