Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1499 ATGAGAGATCTAGAAAAGAAAGAACAACAAATGGCGTCATCATCTGATGTGTCAATGAACGGAAGAGGAGAAATCAACAACAACAACAACGGTGGTGTTGGTGGTGGTGGGGGAGAAGGTCGAAATGAAGCAGAACAGGCACTTTTCAGGGAGCTATGGCACGCGTGTGCAGGTCCTCTTGTAACCGTGCCTAGAGAAGGAGAGCGTGTGTTCTACTTCCCTCAAGGCCATATTGAACAGGTTGAAGCTTCAACTAATCAGGTAGCGGATGAACACATGCCAGTATACGATCTACATTCCAAGATCCTATGTCGGGTAATGAACGTAGTGCTGAAGGCGGAGCCGGACACCGATGAGGTGTTTGCTCAGGTGACCTTAGTTCCTGAGCCAAATCAAGATGAGAGTAAAGTTGTGAATGAGGCATCACCATCGCTGCCACCAAGGTTTCATGTGCATTCATTCTGTAAAACCCTGACTGCCTCTGATACAAGTACTCATGGAGGGTTTTCGGTTCTGAGGCGACATGCTGATGAATGCCTTCCTCCTCTGGACATGACAAAACACCCACCTACTCAGGAATTGGTGACCAAGGACTTGCATGGGAATGAGTGGCGATTCAAGCATATCTTTCGTGGTCAACCACGCAGGCACTTGCTACAAAGTGGTTGGAGTGTTTTTGTCAGCTCGAAGAGGTTGGTTGCTGGGGATGCATTTATATTTATAAGAGGTGAGAATGGGGAACTTAGAGTTGGTGTCAGGCGTGCAATGAGGCAACACAGTAATGTTCCATCATCGGTTATCTCTAGCCACAGCATGCATCTCGGTGTACTTGCAACTGCTTGGCATGCTGTCTCCACTGGGACAATGTTCACTGTTTATTATAAACCTAGGACCAGTCCCGCTGAATTTATTGTTCCATATGATCAGTACATGGAGTCTCTCCAAATTAATTACACCATAGGAATGCGGTTTAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGACCCGAAAAAGTGGCCTGATTCCAAATGGAGAAGTCTCAAGGTGAGATGGGATGAAACGTCTAACATACCTCGTCCTGATAGAGTTTCTCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAACTCTAAATCCTCTTTCAATGCCCAAACCTAAAAGGCCTCGGCCTATAGTGGTTTCTTCATCCTCAGATTCATCTGTTCTTACTCGAGAAGGAGCGTCATCTAAAGTCAGTGTAGACCCTTTGCCCGCAAGTGCATATCCAAGGGTCTTGCAATGTCAAGAATTCTCGACCTTGAGAGGCAACTTGGTAGAAGGCAACAAGTCTGATAATGGCGAGAAGCCTGTTGTGTGGCCACCTGCAGTTGATGATGAGAAGATTGATGCTGTTTACACTTCAAGAAAATATGGATCAGAGGGCTGGATGTCGATGGGGAGACTTGAAACATATTCAGATCTACTTTCGGGCTATGGGACCAATATAGATCTTTCTTCACATCCATCCTTGCTTAATCAAGTTGGCCATGTAGCTAACCCTGTTAAGAAACATTTGGTGGATCGCGAAGGAAAACTTAATGTGATGGGTAGTCCATGGTCCGTGATGCCCTCTAGTTTATCACTCAACCTCGTGAACTCTAATGCAAAAGGTGTGCAGGGTGGTGATACAACTTATCAAGTTCGGCGGAATTTGAGGCATAGTGCATTTGGTGAATATCCTGTACTTCATCATGGTCATAAATATGAGCATCCACATGGAAACCTGATGATGCTACCACCACCCACAACTCAATATGAGAGTCCCTGTTCTAGGGAACTGTTGCTGAAATCAATATCACCCAATACTTCTGAAGTTGTGAAACCAAAAGATGGCAACTGTAAGCTATTTGGCTTCTCACTTCTCAGTAGCCCCACTGCATCGGGTACTTCTATGTCGCATAGAAATGTAGTCAATGAGCCACTTGGTGCCTTGCATCTTCCATCACACCTACATCGTACTTTCGAAAATGACCAGAAGTCTGAACATTCAAGGGTTTCCAAACCTGCGGATGTTGTAGTTGTTGCTGATGACCAGGAGAAGCTTTTACAGACTTCTCAGTCGCACTTGAAAAATGTTCAACCCAAACCACACAGCACCTCTGCTAGGAGCTGCACTAAAGTTCATAAGAAGGGGATTGCACTTGGTAGGTCTGTGGATCTTACAAAGTTCAGTGGCTATGATGAATTAATTGCTGAATTGGACCAACTATTTGAATTTGGAGGTGAATTAACTTCTCCAAAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTTTGTGCCATGGTCTGCAAAATGTATATCTACCCAAAAGAAGAGATTCAGAAAATGAACACCGGTACCCTAAGTTCAAAAAATGAAGAGAATCAGTCAGCTAGCGAAGGTGCAGACATACAAGAAATTAAATGTCAGCCTGAGCATCCAGCTTCTGACACCTGA 2559 0.4474 MRDLEKKEQQMASSSDVSMNGRGEINNNNNGGVGGGGGEGRNEAEQALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLHSKILCRVMNVVLKAEPDTDEVFAQVTLVPEPNQDESKVVNEASPSLPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKHPPTQELVTKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFIRGENGELRVGVRRAMRQHSNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYDQYMESLQINYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKKWPDSKWRSLKVRWDETSNIPRPDRVSPWKIEPALAPPTLNPLSMPKPKRPRPIVVSSSSDSSVLTREGASSKVSVDPLPASAYPRVLQCQEFSTLRGNLVEGNKSDNGEKPVVWPPAVDDEKIDAVYTSRKYGSEGWMSMGRLETYSDLLSGYGTNIDLSSHPSLLNQVGHVANPVKKHLVDREGKLNVMGSPWSVMPSSLSLNLVNSNAKGVQGGDTTYQVRRNLRHSAFGEYPVLHHGHKYEHPHGNLMMLPPPTTQYESPCSRELLLKSISPNTSEVVKPKDGNCKLFGFSLLSSPTASGTSMSHRNVVNEPLGALHLPSHLHRTFENDQKSEHSRVSKPADVVVVADDQEKLLQTSQSHLKNVQPKPHSTSARSCTKVHKKGIALGRSVDLTKFSGYDELIAELDQLFEFGGELTSPKKDWLIVYTDNEGDMMLVGDDPWPEFCAMVCKMYIYPKEEIQKMNTGTLSSKNEENQSASEGADIQEIKCQPEHPASDT* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1499 852 MobiDBLite consensus disorder prediction 819 837 - -
Lan1g1499 852 MobiDBLite consensus disorder prediction 819 852 - -
Lan1g1499 852 SUPERFAMILY CAD & PB1 domains 730 806 - -
Lan1g1499 852 Pfam AUX/IAA family 717 809 IPR033389 -
Lan1g1499 852 Gene3D - 724 818 - -
Lan1g1499 852 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan1g1499 852 Gene3D - 317 387 - -
Lan1g1499 852 SMART B3_2 154 256 IPR003340 GO:0003677
Lan1g1499 852 MobiDBLite consensus disorder prediction 1 41 - -
Lan1g1499 852 Gene3D - 151 256 IPR015300 -
Lan1g1499 852 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Lan1g1499 852 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Lan1g1499 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 836 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan1g1499 852 MobiDBLite consensus disorder prediction 388 412 - -
Lan1g1499 852 ProSiteProfiles PB1 domain profile. 729 811 IPR000270 GO:0005515
Lan1g1499 852 MobiDBLite consensus disorder prediction 11 33 - -
Lan1g1499 852 CDD B3_DNA 152 254 IPR003340 GO:0003677
Lan1g1499 852 PANTHER AUXIN RESPONSE FACTOR 2 34 836 - -
Lan1g1499 852 SUPERFAMILY DNA-binding pseudobarrel domain 150 283 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1499 Lan-Chr1 25271330 25276148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1499 16 842 B3 DNA Binding Superfamily AT5G62000 61.217 0.0 1009
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan1g1499 AUX_IAA 1.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1499 - - gmx:100815956 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0740 12 14640727 14643938 Lan1g1499 1 25271330 25276148 LSH
Lan1g1499 1 25271330 25276148 Lan15g0467 15 10904201 10908801 PCT