LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g1496	ATGGCAAAAGAACAGCAAAAACAGGACACTGCAATCACAACCAACTCTTTTCACCATCAATCCCAGGGGAAAGTCCCAGAGAAAGAAAAGGAATTGGGATTGGGACTCAAAATTGAAGAGGCTGATTCTGAGATTCAGGTTCCTTTGCCTCTAACAGTTACTTCCCGGGCTTTGTATATGTTGGAAGATTTCACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAACTTGTTCGTAAACGCACCGCTAAGTATCGCTCCCCTGGCCTCCCTCACCGCACTTCCACCGCAATTGCCACTGCCGCCGCTATGTCTTCTAGTTCTAGCGCTGGAGAGTCGATCGAGGATGCAAAATGGAATGTGCACCCGGAGCAAACAGAAATTAGTTTGTGGGAGAGGCTTGGTAAAGCTGCAACATTGGACATTGAATCAAGTTCCTTTTCTTGGGACACACTTACTTCACTGCACCACTCTGAACATACCAGCAGCAATGAACTTTCCGAGGATGAAATGAACAAAGCTCTTGAGGTAACTGTCAATTCTGGAGGGGTTGTTTTCTTTGCCTTTTTCAATCACGATGCCACATTTCCGAAAGAAGCAGCAGCTGTTATAAAGATCTCATCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTATGAATTTGCCAAATGGCTGGGAGTCCAAACTCCACAGGCTAGAGTCATTCACAATACCAATTCAGAGTGGCACCAAATAAAGGAAGCAACAGAAAAGGCTAGAGAGATAGCATGTTCTGAGGGTGATGAAGTTAGTGAAATGACATGCTTTGAACTTTTGGAAGCACTTGATCTTAGCCGATGTCTCTTCTTTATGAATTATGTACATGGTTCACCTTTGCTGGAAAGCTCTAGTGCATTTGAGTCACGGGAATCTGCAGAAAGAACATCAGCAGCTCTTGGCAGGGTACTAATGTTGGACCTTGTCATCAGGAATGAAGATAGGCTTCCGTGCCGTGAGCTTAGGTGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAAGATGACATCTGAAAATACAGATACACTACAAGCAGTTATTGATTCTGCAATTAATCGATATAGACCAAAGGTGATTAAAGCACTTCAGAAAGAAAGAAGGTCAACTTCTGCAGATAGCAGATTCGATTCTCATAAAGGACCTCTCTTGATATCGCAAATCTCTGATCTTACAGAGATAACAGAATCACCAGGATCCACTGACTCGATGAGCCTTAAAAGTCAAACATCAGAAGAATCATTGCCTCCTGACTTCAATATTGTAGCCATTGATTCTGGTGTTCCTCGCCGACCTCCTGCTGGGAAGCGTACAAATGATCAGGTTAATTATCCTAAATTGGTTGAGTTGCTTCTCAATAGTTCTGAGTTTGGCTCAAATGTGTTATATGATATAACTGGAGGGAAATTAGGATTTCCAACCCCAGAAGACATAAATACAACATATATACATGCTAGTGACATGACATCAGTTATTCAAGCATTCCGCACTGGTTTCCGTGGTGCTCTTAGGGATCTGCAGGGATTTCAAATATTCCTTCTCACACTTCACCAAAGACTTGATACCTTGTTCCGATCATTTATGAACATCATAAGCAAAATATCATCAGGGGAATCTGACAAAGATGATCCAATGGTTCCTGACTCACCTTCACTGGCTGCTAGTGGTAGTTGTTCCTCTACACCATGTAAGGAGAGGTTTGCTAATGAAAACCATCAAGATTTTACTGATTCGGAGTCACAAAAGTCTGCTTCAAGGTCATCATCTTCAGGCAATAGAGATTGCTTTGACTCTGCTTCAAATGTGTCAAGGGAAAGTTGGCATGGAAAGTTCAATAAAGGAAGTGGGGGGGAGCAACTTCGAAGTCTCCGCTTGACAGCTAGGCTCCGTGACTTCAATAAATTTTTCAAGGTTGATGCTGAATCTAATAAGGAATTGGAACAGTGGAATGAAATGCTTAAAAATGATGCTATCAAGCTATGTCAGGAGAACAATTTCAATCCAGGATTTTTCGAGGGTAGTGATAATAACAGCGTCGTTGATGCATATGAACTCAAGGTCAGACTTGAGCATATCCTTGAGAGAATTGCATTGATATCTGAGGCTGCAAGTACAGAGAGACCATCTGCTGTTACAAGTAGTTTGTTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACGCTGCAATACTTTGGAATCACACATATTTTGTGTTTGTGTACCAATGAAATAGGACAGTCAGATTCACAGTTTCCTGATCTATTTGAGTACAAAAATTTCTCTCAGGTGTGTGACAACGAAGATTTTAACATCAGTAGCATATTTGAAGAAGCTTGTGATTTTATAGATTACGTTGAACAAACGGGTCAGAAGGTCTTAGTTCACTGCTTTGAGGGGAGAAGCAGAAGTGCTACCTTGGTCCTTGCTTACTTGATGCTCAGGAAGAAGTTCACGCTATTGGAAGCATGGAATGCTCTGAAACGAGTTCACCGTCGTGCACAGCCCAATGATGGTTTTGTGAAGATCTTACAGGAACTGGATCAGAAACTGCATGGGAAGATTTCAATGGAGTGGCAACAGCGAAAACCGACGATGAAAGTTTGCCCCATCTGTGGGCAGAATGCTGGACTAAGCAGCAGTTCACTTAAGCTACATTTGCAGAAATCACATAGAAAACTATCATCTGGGAGTGTAGATAGTGCTATGACAATGGAGATACAAAAGGCGTTGACAGCTTTGAAGATTAGCCGCGGTGGGAGTGTCAGTCCTACGCAGAGGTCGTCTCATTCAATAATAGATGAATAG	2850	0.427	MAKEQQKQDTAITTNSFHHQSQGKVPEKEKELGLGLKIEEADSEIQVPLPLTVTSRALYMLEDFTAGPAFRFTQWLQLVRKRTAKYRSPGLPHRTSTAIATAAAMSSSSSAGESIEDAKWNVHPEQTEISLWERLGKAATLDIESSSFSWDTLTSLHHSEHTSSNELSEDEMNKALEVTVNSGGVVFFAFFNHDATFPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNTNSEWHQIKEATEKAREIACSEGDEVSEMTCFELLEALDLSRCLFFMNYVHGSPLLESSSAFESRESAERTSAALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMTSENTDTLQAVIDSAINRYRPKVIKALQKERRSTSADSRFDSHKGPLLISQISDLTEITESPGSTDSMSLKSQTSEESLPPDFNIVAIDSGVPRRPPAGKRTNDQVNYPKLVELLLNSSEFGSNVLYDITGGKLGFPTPEDINTTYIHASDMTSVIQAFRTGFRGALRDLQGFQIFLLTLHQRLDTLFRSFMNIISKISSGESDKDDPMVPDSPSLAASGSCSSTPCKERFANENHQDFTDSESQKSASRSSSSGNRDCFDSASNVSRESWHGKFNKGSGGEQLRSLRLTARLRDFNKFFKVDAESNKELEQWNEMLKNDAIKLCQENNFNPGFFEGSDNNSVVDAYELKVRLEHILERIALISEAASTERPSAVTSSLFIGGALAARSVYTLQYFGITHILCLCTNEIGQSDSQFPDLFEYKNFSQVCDNEDFNISSIFEEACDFIDYVEQTGQKVLVHCFEGRSRSATLVLAYLMLRKKFTLLEAWNALKRVHRRAQPNDGFVKILQELDQKLHGKISMEWQQRKPTMKVCPICGQNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSSHSIIDE*	950

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan1g1496	949	Gene3D	-	293	411	IPR036940	GO:0016301
	Lan1g1496	949	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	791	843	IPR000387	GO:0016311\|GO:0016791
	Lan1g1496	949	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1	26	949	IPR035010	GO:0004721\|GO:0009737\|GO:0043622
	Lan1g1496	949	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	721	867	IPR029021	-
	Lan1g1496	949	SUPERFAMILY	Protein kinase-like (PK-like)	74	455	IPR011009	-
	Lan1g1496	949	MobiDBLite	consensus disorder prediction	551	572	-	-
	Lan1g1496	949	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	721	867	IPR020422	GO:0006470\|GO:0008138
	Lan1g1496	949	Pfam	Actin-fragmin kinase, catalytic	128	420	IPR015275	-
	Lan1g1496	949	ProSitePatterns	Tyrosine specific protein phosphatases active site.	809	819	IPR016130	GO:0016311\|GO:0016791
	Lan1g1496	949	Pfam	Dual specificity phosphatase, catalytic domain	740	863	IPR000340	GO:0008138\|GO:0016311
	Lan1g1496	949	MobiDBLite	consensus disorder prediction	585	613	-	-
	Lan1g1496	949	MobiDBLite	consensus disorder prediction	594	613	-	-
	Lan1g1496	949	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lan1g1496	949	Gene3D	Protein tyrosine phosphatase superfamily	696	868	IPR029021	-
	Lan1g1496	949	PANTHER	DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN	26	949	-	-
	Lan1g1496	949	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lan1g1496	949	CDD	DSP	722	860	-	-
	Lan1g1496	949	SMART	dsp_5	721	864	IPR020422	GO:0006470\|GO:0008138
	Lan1g1496	949	MobiDBLite	consensus disorder prediction	408	427	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g1496	Lan-Chr1	25222728	25229038	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g1496	27	933	Protein tyrosine phosphatase (PTP) family	AT5G23720	63.141	0.0	1108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g1496	K14165		-	gmx:100791993	1365.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan1g1496	1	25222728	25229038	Lan1g1496	1	25222728	25229038	ECH