Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1493 ATGGCAGCTTTTTCTTACCAATACCATCCCTTTCTTGTTGACCCTGCATTCATTCCCAACACTCCTATCATCATGTCTTCTTTGACTCATCAGAAACATGCCCATATAAACACTACACTTCCTTCTTATCAATCTCATCTTCTTCAAGCAAATCAAGAAACTAGTTGTGTTGATCATAGCTCCAAGGTTAGCATCAGTGACACTGAGCCTTCTTTTGTTATAAAAGATAACTGTAGTCCTCAGTGCTCCATGGTTGTGGATAAGGTTGAAAACGGTGAGCAGGTTAATCAGAAAGTGGCTCCTATGGAGAAGAAGAGGAGAATTAGAAATGGGTCTCCCTTGAGTGTTTCTCAGTCTAAGGACTCAAGAGAAGGGAGAAACAAGAAGCAAAAGAAGAACGATGATGAGGTGAAAGAAGAAGACAAGCCAAAAAAAGAGAAGAAGGTTGAGAAAGAAGGTCCAGAAGAGCCTCCAAAAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCCGAAAGGGTGAGAAGGGAGAAAATAAGTGAAAGGATGAACATGTTACAGAAACTTGTGCCAGGTTGTGATAAGGTAACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAGAATCAAGTGGAGTTCTTGTCAATGAAGCTTGCTTCTGTGAATCCCATGTTCTTTAACTTGGCTATAGACCTAGACCTAGATACCCCAATGGTTCTACCTGAGAAATTAAATAGCATAGTATCACCAACCCCACCACTATCATCTATACCACAATGCAGTTTGAACCAGTCATCACATTTTGCTGATACAACCACCATAGCCACCAACAACAACACAGGTTTCCTTGCTGCTAATGAATATCTTTTAGATTATGCTTTTCTTCAAGGGCAAAGGTCAACTTTCTTCTCTGAGTATAGTGGAGGTCAATTCTGGGACGTGGAAGACCAACGACAAAAGTTTCTTAATCCATATGGATTCGGCAATGACTCATGTTCCTTAAATTAA 1047 0.4088 MAAFSYQYHPFLVDPAFIPNTPIIMSSLTHQKHAHINTTLPSYQSHLLQANQETSCVDHSSKVSISDTEPSFVIKDNCSPQCSMVVDKVENGEQVNQKVAPMEKKRRIRNGSPLSVSQSKDSREGRNKKQKKNDDEVKEEDKPKKEKKVEKEGPEEPPKGYIHVRARRGQATDSHSLAERVRREKISERMNMLQKLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFFNLAIDLDLDTPMVLPEKLNSIVSPTPPLSSIPQCSLNQSSHFADTTTIATNNNTGFLAANEYLLDYAFLQGQRSTFFSEYSGGQFWDVEDQRQKFLNPYGFGNDSCSLN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1493 348 CDD bHLH_AtBPE_like 160 241 - -
Lan1g1493 348 MobiDBLite consensus disorder prediction 93 177 - -
Lan1g1493 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Lan1g1493 348 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 348 IPR024097 GO:0006355
Lan1g1493 348 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 348 - -
Lan1g1493 348 MobiDBLite consensus disorder prediction 121 177 - -
Lan1g1493 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 237 IPR036638 GO:0046983
Lan1g1493 348 Gene3D - 167 238 IPR036638 GO:0046983
Lan1g1493 348 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Lan1g1493 348 SMART finulus 176 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1493 Lan-Chr1 25146075 25149805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1493 1 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.035 4.60e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1493 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1493 - - gmx:100796018 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1493 1 25146075 25149805 Lan1g1493 1 25146075 25149805 ECH
Lan1g1907 1 34294679 34298068 Lan1g1493 1 25146075 25149805 LSH