Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1475 ATGGACTGGAATTTGAAGTCACCTTCTTTGGATTTGACTGAAGTGGATCAAGGAACAACTTTTCCAAACATGGAAACAGTGGATGAAGGGTCAAGCAGGTATGGTGTTTATAGAACAAAAGGTGAGTTTTCTGTGGACTTGAAACTTGGCCAAGTTGGGAATTTTGGCATAGAATCAGTGATGGCTAAGCCTAAAGATACTTATGCTGCTGCTGGAGTATCGAAAATGGCATCATCTCCTTCGGGGTCATCTAAGAGAGCTAGAGCCTTTAACAATGGGAATCACGTAGTTACATGCCTTGTGGATGAGTGCAAATCAGATCTTAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGTCTCCACAGGTCACAATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTAGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACAGAAGGAGAAGAAAGCCACAACCAGAACCACTCACGCGTTCTAGTAATTTTTTGTCCAATTACCAAGGCACCCAATTGCTACCATTCTCAAGTTCACATATATACTCTTCCACTGCTATGGTGAATCCTGCATGGAATGGAGTTGTTACTTCTAGTGCAGATGTTAGGCTCCAAAACCAACACCAACAAGTGAATTTCATAGAAAAACAAGACCTTTTTCTTGGATCTTCCCCAACAAGCTACAAAGAAGGGAAGCAACTTGCATTCTTACAAGGTGATCACAACCAAAACACACACCATCTTCACACACTTCTCAGGACTAGCCCTTACTCAGAAAGTAGTGAAGGGTTGAGAAGCAAAATGTTCTTTGATAATAATAATAGCCTAACAAGTTCAGTTCATGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACAAGTACACAACAACCCTGGAAATGGATTGAACCAAATGGTGCAGCCTCATTCATCATCACTCATGCAACCCTTAGGACTAAGCCTGCATGATAATAATAATAATAGTTTGGAGTCTGTGGAACCAGTTTTGGATCCTAATGGTAGTGACCATTGTTCATCAATGTATAACATTGGTTCTAGTGGATCACAGGGGAGTGATGCACCTCAACTATTTCCATTTCAATGGGAATAG 1173 0.4169 MDWNLKSPSLDLTEVDQGTTFPNMETVDEGSSRYGVYRTKGEFSVDLKLGQVGNFGIESVMAKPKDTYAAAGVSKMASSPSGSSKRARAFNNGNHVVTCLVDECKSDLSNCRDYHRRHKVCELHSKSPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSSNFLSNYQGTQLLPFSSSHIYSSTAMVNPAWNGVVTSSADVRLQNQHQQVNFIEKQDLFLGSSPTSYKEGKQLAFLQGDHNQNTHHLHTLLRTSPYSESSEGLRSKMFFDNNNSLTSSVHESPCALSLLSSPQVHNNPGNGLNQMVQPHSSSLMQPLGLSLHDNNNNSLESVEPVLDPNGSDHCSSMYNIGSSGSQGSDAPQLFPFQWE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1475 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 390 - -
Lan1g1475 390 MobiDBLite consensus disorder prediction 162 183 - -
Lan1g1475 390 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Lan1g1475 390 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Lan1g1475 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 390 IPR044817 GO:0003677
Lan1g1475 390 SUPERFAMILY SBT domain 97 178 IPR036893 GO:0003677|GO:0005634
Lan1g1475 390 Pfam SBP domain 99 172 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1475 Lan-Chr1 24752881 24758979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1475 1 390 SBP-box Gene Family AT5G50670 41.935 1.07e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan1g1475 SBP 3.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1475 - - gmx:100806507 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0765 12 14920636 14924386 Lan1g1475 1 24752881 24758979 LSH
Lan1g1923 1 34490200 34493546 Lan1g1475 1 24752881 24758979 LSH