Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1459 ATGGAACACTCTGAATCCGATTCTGCTCTTGTTTCCAATGGTTCTTCTGTCACTGACCCTCAATTTGATTCTCAATTAGCACCATCTTCCCTTCATTCCCATCACGATCGCGATCCTGAACCCTCAGATCTCAGTCATGTGACCCAGGTTGAAGAAGATGCACTTGGTGCAGAGCTTGAGACCAAGTTGGATTTGAAGGGTGAGGGTGAAGTGGGTGCTGAAACTGTGGATAAAGTTTCGAACTTTGGTGATGGGGAACATGTATGTGATGAGGGTGAGGGTGGTCGTGGTGATGATGATGGTGTTGTTGAAGTTGAAGAATCTGTTAAGGTTAATGTGAATGATGGGTTTGGTGGAAATATTAGGGGTTGGGATTGTAATAGTTGGGATGAGGATGTGAATGAGGGTGTGAATGTGAATGAGGGTTTTAATGAGTATGAGGTTGGTGGAGATGATTATGTTGTGAATGATGGTGATTGGGCACAGGTAGAAGAGAAAATCAGGGGTAGAACTCAACATTACCCTTTAAGACCTGATGCTGAGGATTGTGCATATTATATGAAGACCGGGAGTTGTAAATTTGGTTTCAATTGCAAGTTTAACCATCCGATCCGAACGAGAAACCAGTCTTTTAAGGATAAGGCCGCAGAAAGAGAAGACTCAACAGAAAGATCGGGCCAGACAGAGTGCAAGTATTATCTAAGGTCTGGAGGTTGTAAGTTTGGAAAGGCTTGTAAATATAACCACACAAGAGGAAAATATTCAGCAGCCCCAGTTTCAGAACTTAACTTTCTCGGCCTACCTATTCGTCTGGGAGAGAGAGAGTGCCCATATTACATGCGAACTGGCTCTTGTAAGTATGGAGCAACCTGCAAGTTTAATCATCCTGACCCTACAACTATCGGAGGACCAGATTCTCCTTCTGGGTATGGTAATGAAGGGTCTATTTCATTACAAGGTGTATCAAAACCATCTGTATCCTCTTGGTCTCCTCCAAGAACCTTAAATGAAACACCTTTTGTGCCAATGCTTTCACCTTCTCAAGGGGTTTCTCCCCGAAGTTCTGATTGGAATGGATATCAGGCACCTATGTATCTATCTGATTGGAGTATGCATCCACCTTCTGCATATGTCATGAGCAATCCAGCAATTGAAACAAATGTTTATATGCAACATCAAAAGCAGATGCCGGTTGATGACTTCCCAGAGAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGCAAATTTCACCATCCAAAGAATCGGACTGCAAGATTACCCCCATGCATCCTCAGTGACAAGGGTCTGCCTTTAAGGCCTGACCAGAATATCTGTTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAGGTTTGATCACCCGATAGACTTGCAGTCCACGGTGATTCCAGCATTTGATGAGCAGTCCTATACAAACTCACCTAATGTTGAGGTGGCTGGGATGGGTGGAAGTGCAGATGCAAGTGATGTGACAATTCAGCAATATGTGTAA 1557 0.4348 MEHSESDSALVSNGSSVTDPQFDSQLAPSSLHSHHDRDPEPSDLSHVTQVEEDALGAELETKLDLKGEGEVGAETVDKVSNFGDGEHVCDEGEGGRGDDDGVVEVEESVKVNVNDGFGGNIRGWDCNSWDEDVNEGVNVNEGFNEYEVGGDDYVVNDGDWAQVEEKIRGRTQHYPLRPDAEDCAYYMKTGSCKFGFNCKFNHPIRTRNQSFKDKAAEREDSTERSGQTECKYYLRSGGCKFGKACKYNHTRGKYSAAPVSELNFLGLPIRLGERECPYYMRTGSCKYGATCKFNHPDPTTIGGPDSPSGYGNEGSISLQGVSKPSVSSWSPPRTLNETPFVPMLSPSQGVSPRSSDWNGYQAPMYLSDWSMHPPSAYVMSNPAIETNVYMQHQKQMPVDDFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRTARLPPCILSDKGLPLRPDQNICSHYSRYGICKFGPACRFDHPIDLQSTVIPAFDEQSYTNSPNVEVAGMGGSADASDVTIQQYV* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1459 518 Gene3D - 219 302 - -
Lan1g1459 518 Gene3D - 450 499 - -
Lan1g1459 518 Gene3D - 372 441 - -
Lan1g1459 518 Gene3D - 154 215 - -
Lan1g1459 518 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Lan1g1459 518 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 15 518 - -
Lan1g1459 518 SMART c3hfinal6 450 477 IPR000571 GO:0046872
Lan1g1459 518 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Lan1g1459 518 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Lan1g1459 518 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Lan1g1459 518 SMART c3hfinal6 404 431 IPR000571 GO:0046872
Lan1g1459 518 PANTHER PROTEIN PHOSPHATASE RELATED 15 518 - -
Lan1g1459 518 SUPERFAMILY CCCH zinc finger 228 254 IPR036855 GO:0046872
Lan1g1459 518 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Lan1g1459 518 MobiDBLite consensus disorder prediction 1 55 - -
Lan1g1459 518 SUPERFAMILY CCCH zinc finger 448 476 IPR036855 GO:0046872
Lan1g1459 518 SUPERFAMILY CCCH zinc finger 177 205 IPR036855 GO:0046872
Lan1g1459 518 MobiDBLite consensus disorder prediction 300 332 - -
Lan1g1459 518 SUPERFAMILY CCCH zinc finger 409 433 IPR036855 GO:0046872
Lan1g1459 518 MobiDBLite consensus disorder prediction 30 55 - -
Lan1g1459 518 ProSiteProfiles Zinc finger C3H1-type profile. 404 432 IPR000571 GO:0046872
Lan1g1459 518 SUPERFAMILY CCCH zinc finger 271 297 IPR036855 GO:0046872
Lan1g1459 518 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Lan1g1459 518 MobiDBLite consensus disorder prediction 310 332 - -
Lan1g1459 518 ProSiteProfiles Zinc finger C3H1-type profile. 450 478 IPR000571 GO:0046872
Lan1g1459 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 296 IPR000571 GO:0046872
Lan1g1459 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 406 431 IPR000571 GO:0046872
Lan1g1459 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 249 IPR000571 GO:0046872
Lan1g1459 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 453 476 IPR000571 GO:0046872
Lan1g1459 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 203 IPR000571 GO:0046872
Lan1g1459 518 MobiDBLite consensus disorder prediction 80 100 - -
Lan1g1459 518 MobiDBLite consensus disorder prediction 7 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1459 Lan-Chr1 24609004 24613432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1459 171 479 C2H2 Transcription Factor Family AT3G02830 41.265 1.67e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan1g1459 zf-CCCH 2.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1459 - - lja:Lj4g3v1389250.2 629.402