Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1458 ATGGCGGACCCGGAGATTCTCCCATGGTTGAAATCGATGCCAGTTGCTCCAGAATACCGACCAACCCTAGCAGAGTTCCAAGATCCAATTGCTTACATTTTCAAGATCGAGAAAGAAGCTTCTAGATACGGAATCTGCAAAATCATTCCTCCGGTTCCACCTTGTTCTAAGAAAACCGCTATTTCCAACCTCAACCGCTCTCAACCGTCTTTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCCGTGCTCAGCCCGTGCGCCGCCCCGTATGGAAGAGTGGGACCTACTACACGTTCAAAGAGTTCGAAGCCAAAGCCAAAGCGTTCGAGAAAACGTATCTCAAGAAACACTGCTCCAAGAAGAGTAATAACAGTGCTGCGGTTGCGCCTTCCGCGCTTGAAGTTGAAACGCTGTATTGGAAGGCGACGTTGGATAAACCGTTTTCGGTTGAGTATGCGAATGATATGCCCGGTTCGGCTTTCGGTCCGGTGAGCAATGGAGGAGAGAGTGTTGGTGACAGTGCGTGGAACATGAGAGTGGTTTCGAGGGCGAATGGTTCATTGTTAAGGTTTATGAAGGAAGAGATTCCTGGGGTTACTTCACCAATGGTGTATGTGGCGATGTTGTTTAGCTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGTCTTAATTATCTTCATTTCGGGGCTCCGAAGACTTGGTATGGTGTCCCTAGGGATGCTGCGTTTGCGTTTGAGGAAGTTGTTAGAGTTCATGGATATGGTGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACTACAGTGATGCCACCAGAAGTATTTATTGGTGCAGGTGTTCCGTGTTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACATTCCCAGGAGCCTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCATCTAACATTGCAACACCTGAATGGTTGAGGGTGGCTAAAGATGCTGCCATTCGCAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATCCCTGAGGGAACAAATACTAAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAAGGTGAAGGGGAAACTGTAATCAAAGAGCTATTTGTAAAGGACGTGTTACAGAACAATGATCTGCTTCATGTACTCAGCAAAGGCTCTGCTATAGTACTTCTTCCTCATAGGTCTTATGACTTTTCTGTTTGCTCAACATTACGCATTGGATCCCAACAACTAAAAGTGAACCCTGAGTCCATGAACGTAAGCTCAAAGGGAGTAAATTCTTCAAAGGGTTTGATTTCTGATGACTTGGCTTTTGTCACTAATGATGGAATCAAGCAAGTAAAAGGTTTTTATTCTGTAAAAGAAAAGTTTGCTACGCAGTGTGAAAGGAACAGGACTTCCTCATTGAGCAAGCTTGGTAATACTTGCACTTCAAGGTCAAAGACAGTACAAAAAGACACTGAACAAGAAACAAGTGAAGGAGATGGGTTGTCGGATCAGAGACTATTTTCATGCGTCACATGTGGAATATTAAGCTTTGCCTGTGTTGCTATTGTACAGCCCAGGGAACCAGCAGCTAGATACCTTATGTCAGCTGATTACGGTTTCTTTACTGATTCAGTTGCTGGTTCTGGAGGAACTAGCCATAAGTTTACTATTGCTCATGAAGAATGGACAGAACAGAATGCCCGGAATGATTTATATGATGCTCCTGTTGAATCTGTGAAACAACAGACACAGATTGCTGATCAAAATTACGAGTCTTTAAATACTGAACAAACAAAAGGCAGTACGGCTCTTTCGTTATTGGCTTCAGCATATGGAGATTCCTCTGACTCTGAGGAAGATCAGGGTAACTCAGATATTGCAGTTGAAGGTGATGAATTGAACATGATAAATCCTCCATCAGCAAGTAGATCTCAGGAGATATCTTGTTTGCCTTCTCATTCTCAAGATGGCCATGCCAGTCCCGGGGTTAGACTTGATAAAGAAGATTATATTCCTTCAAAGAGTTCTGACAGTCATGAGGATTATATGCGTACGAGGGTTGAGCACGTTATGAGTCCTTCTAACTGGTCTGTCAAGTCAGAAGATCATGACATCACTTCAGGGGTTGTATTTAAAAATATGATGGCAGTGCCTCATTCCATGTTGAGTTGTCCTCAAGATGTTGAAACATCATTGCTGGGCAAGGCTGTGATTCCTATTGATAAACATTCTTCATTGGTGCCTCTATCTGATGAAGACTCATCCAGAATGCATGTCTTCTGTCTAGAACATGCTGTAGAAGCAGAGCAGCAACTTCGCCCTATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATACCAAGATAGAGGCTGAAGCTAAGCTTGTGGCAGAAGAACTGAGCATTGATTACACATGGAAGAATAATGCATACAGGCATGCTAATAAGGATGATGAGGAGAGGATCCAATCAGCTCTGGACAGTGAGGAAGCTACTTCTGGGAATGGGGACTGGGCTGTAAAACTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCCCCACTTTATAGCAAGCAGATGCCTTACAATTCTGTTATTTATTTTGCATTTGGTTGTAGCTCTCCAGAAAGCTCTCCCGCAGAACCTAAGGTCTATCGGAGAAGGGGCAACAGGCAGAAAAAGGTGGTTGCTGGTAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGTGAAAGGAGAAGCTGAGGACATTGAGGATGAGAAAAGCTTGCATGGATGGCCATTACACGATGTGAAAATTGAGAGATCAGAAGGCATCCACAAAAGCAATACTACTATTAGAAACTCTAGTAGGAAAAGGAAAATGGCGGTAGAGAGTGGTGGATCAAGGAAAGGAAGTTTTGGTGTGAGGGATTGTCTTTCAGATGATTCAATTGAAGATAAATCCAATCAACATCAAAGGAGGATTCTTAGAAGTAAGAGAACCAGGCATATTGAGAAAGATGATGCAGCTTCGGAGGGGGATTATTCTCCTCTGAAGCATCATAGAAAGCCTATAAGCAAGCATACAAAATGCGTTGAAAGTGATACAATTTCAGATGATTCTCTGGATGATAATTCTCATATACAGCATAGGAAGAATGCTAATGCCAATGAAGCTGAGTTTATTGACAATGATGTGGTTTCAGATGATGCAGTAAGTGAGGATTCTGATTGCTCTCCCAGAGGAGAGCTTAGCAGCGAGCAAGATGCAATTTCAGATGATTCATTGGCTGTTGGTTCTCTTAAGCTTCATAGAAAGACTCCTAAAAGCAAGTATGGCAAATACATTGCTGAAGAAGATGAGATTTCGGATGATGATCAAGTGGAGGTTTGTTTTCAGAAGGAGCAAAGGAGGATACCTAAAAGCAAGCAACACAAATGCCTTTCTGAAAAAGATACAATGATATCTGATGATCAACTGGCGCACCGTGTGCGAAAGCAGCAACAAAAGAATCCTAAAAGCAAAATAGATAAATATCATGCTGGAGAGGATATTATATCTGATGACCAACTGGAAGTTCCTTCTCGCAAGTATCAAAGAAGGATTCCTAAAAACAAGCAAGCCAAATGCATTGCTGGGAAAATTGTAATGTCTGGTGGTCAATTGGAGAATCACTTTCAGAAGCACCAAAGGAGTGTTCCTCGGAGCTGGCAAATCAAATGTTGTGATAGAGAAATTATGGATGACAAAATTGAAAATAATTCTCGTCGGCTGTGTAAAACTCCTAAAAGAAGGCAACCTGAATGCATGGATGAAGAGAATATAAATTCAGATGATCAAAAGGATGATTCTCTGCAGCGTAGGAGAACTGCTCGAGGTAGGCAATCTAAACCACAGACTCTTCAACAAATGAAACAAGTTAAATGTAAGGATGAAGACAGTTCAAATTCAGATGATCAAATGGAGGATGATTCTCAGCAGCAAAGGAGAACTGTTCGAAGTAAGAATTCTAAATCTCAGACTCTTCAACAAATGAAACAAGCTAAATGGAAGGGTGAAGACAATATAAGTTCGGGTGATCAAATGGAGGGTGATTCTCAGAAGCATAGGAGAACTGTTCGAGGTAAGAAATCTAAATCACAGACTCTTCAACAGATGAAACAAGCTAAATGGAAGGATGAAGAAAATACCAATTCAGATGATGAAATGGAGGATGATTCTCATCAGCATAGGAAAACTGTTCAGAGTAAGCAATCTAAATCGCAGACACTGCAACAAATGAAACAAGCTAACTCTGCCCATGGGAGAAGACAGACATCCCGACCTGTTAAGCGAGGTGCCCAAATGCTAATGAAATCAAAGCCGCCTCGGCAAATGAAGCAGCAACCTTGTGTGCAGAATAATCAATCAGAAGAAGAGGAAGAGGAGGACGTGGAGGGGGAGGAAGAACAAGTAGGTGGACCTAGTACACGCCTTAGGAAGAGAGTCCCAAAACTCGAGGAATCTGAAGGAAAATCAAAAGAAAAGGAAACCAAAAGGAAAAGGGTAAAGATTGCTACAACTGCAAAGGTTTCAGCCCGACAAGCCAAAATGAAGGACGAGGAAGCAGAGTACCAGTGTGACATTGAAGGGTGTACCATGGGTTTTGGGTCTAAACAAGAGCTGATGCATCATAAGAGAAATATTTGTCCTGTGAAAGGATGCGGCAAGAAGTTTTTCTCACACAAATATCTAGTTCAGCATCGTCGAGTTCATGAGGATGACCGCCCCTTGAAGTGTCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGCACTGAACATATTCGAGTCCACACTGGTGCTCGTCCTTATGTATGTGCTGAGCCGGGTTGTGGACAGACATTCAGATTTGTTTCTGATTTCAGTCGTCACAAGCGAAAGACTGGCCATTCAACAAGGAAAAGTTGTTAA 5040 0.4276 MADPEILPWLKSMPVAPEYRPTLAEFQDPIAYIFKIEKEASRYGICKIIPPVPPCSKKTAISNLNRSQPSFTTRQQQIGFCPRRAQPVRRPVWKSGTYYTFKEFEAKAKAFEKTYLKKHCSKKSNNSAAVAPSALEVETLYWKATLDKPFSVEYANDMPGSAFGPVSNGGESVGDSAWNMRVVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAFAFEEVVRVHGYGGEINPLVTFAILGEKTTVMPPEVFIGAGVPCCRLVQNAGEFVVTFPGAYHTGFSHGFNCGEASNIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPEGTNTKPRSSRLKDKRKGEGETVIKELFVKDVLQNNDLLHVLSKGSAIVLLPHRSYDFSVCSTLRIGSQQLKVNPESMNVSSKGVNSSKGLISDDLAFVTNDGIKQVKGFYSVKEKFATQCERNRTSSLSKLGNTCTSRSKTVQKDTEQETSEGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADYGFFTDSVAGSGGTSHKFTIAHEEWTEQNARNDLYDAPVESVKQQTQIADQNYESLNTEQTKGSTALSLLASAYGDSSDSEEDQGNSDIAVEGDELNMINPPSASRSQEISCLPSHSQDGHASPGVRLDKEDYIPSKSSDSHEDYMRTRVEHVMSPSNWSVKSEDHDITSGVVFKNMMAVPHSMLSCPQDVETSLLGKAVIPIDKHSSLVPLSDEDSSRMHVFCLEHAVEAEQQLRPIGGAHILLLCHPDYTKIEAEAKLVAEELSIDYTWKNNAYRHANKDDEERIQSALDSEEATSGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYFAFGCSSPESSPAEPKVYRRRGNRQKKVVAGKWCGKVWMSNQVHPLLVKGEAEDIEDEKSLHGWPLHDVKIERSEGIHKSNTTIRNSSRKRKMAVESGGSRKGSFGVRDCLSDDSIEDKSNQHQRRILRSKRTRHIEKDDAASEGDYSPLKHHRKPISKHTKCVESDTISDDSLDDNSHIQHRKNANANEAEFIDNDVVSDDAVSEDSDCSPRGELSSEQDAISDDSLAVGSLKLHRKTPKSKYGKYIAEEDEISDDDQVEVCFQKEQRRIPKSKQHKCLSEKDTMISDDQLAHRVRKQQQKNPKSKIDKYHAGEDIISDDQLEVPSRKYQRRIPKNKQAKCIAGKIVMSGGQLENHFQKHQRSVPRSWQIKCCDREIMDDKIENNSRRLCKTPKRRQPECMDEENINSDDQKDDSLQRRRTARGRQSKPQTLQQMKQVKCKDEDSSNSDDQMEDDSQQQRRTVRSKNSKSQTLQQMKQAKWKGEDNISSGDQMEGDSQKHRRTVRGKKSKSQTLQQMKQAKWKDEENTNSDDEMEDDSHQHRKTVQSKQSKSQTLQQMKQANSAHGRRQTSRPVKRGAQMLMKSKPPRQMKQQPCVQNNQSEEEEEEDVEGEEEQVGGPSTRLRKRVPKLEESEGKSKEKETKRKRVKIATTAKVSARQAKMKDEEAEYQCDIEGCTMGFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTRKSC* 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1458 1679 Pfam JmjC domain, hydroxylase 205 323 IPR003347 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1289 1316 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1027 1046 - -
Lan1g1458 1679 ProSiteProfiles Zinc finger C2H2 type domain profile. 1587 1616 IPR013087 -
Lan1g1458 1679 SMART cupin_9 172 341 IPR003347 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 683 703 - -
Lan1g1458 1679 ProSiteProfiles Zinc finger C2H2 type domain profile. 1617 1646 IPR013087 -
Lan1g1458 1679 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1346 - -
Lan1g1458 1679 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1396 1670 - -
Lan1g1458 1679 SMART c2h2final6 1647 1673 IPR013087 -
Lan1g1458 1679 SMART c2h2final6 1617 1641 IPR013087 -
Lan1g1458 1679 SMART c2h2final6 1564 1586 IPR013087 -
Lan1g1458 1679 SMART c2h2final6 1587 1611 IPR013087 -
Lan1g1458 1679 ProSiteProfiles Zinc finger C2H2 type domain profile. 1647 1678 IPR013087 -
Lan1g1458 1679 SMART JmjN_1 15 56 IPR003349 -
Lan1g1458 1679 ProSitePatterns Zinc finger C2H2 type domain signature. 1649 1673 IPR013087 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1495 1509 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 660 678 - -
Lan1g1458 1679 ProSiteProfiles JmjC domain profile. 172 341 IPR003347 -
Lan1g1458 1679 Coils Coil 599 619 - -
Lan1g1458 1679 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 971 1072 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1414 1439 - -
Lan1g1458 1679 ProSitePatterns Zinc finger C2H2 type domain signature. 1589 1611 IPR013087 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 499 523 - -
Lan1g1458 1679 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1346 - -
Lan1g1458 1679 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1396 1670 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 657 703 - -
Lan1g1458 1679 Gene3D Cupin 9 345 - -
Lan1g1458 1679 Gene3D Classic Zinc Finger 1585 1671 - -
Lan1g1458 1679 ProSitePatterns Zinc finger C2H2 type domain signature. 1619 1641 IPR013087 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1001 1018 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1510 1543 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1358 1377 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1054 1072 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1095 1120 - -
Lan1g1458 1679 SUPERFAMILY beta-beta-alpha zinc fingers 1635 1669 IPR036236 -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1442 1463 - -
Lan1g1458 1679 Pfam jmjN domain 17 50 IPR003349 -
Lan1g1458 1679 SUPERFAMILY beta-beta-alpha zinc fingers 1603 1645 IPR036236 -
Lan1g1458 1679 SUPERFAMILY Clavaminate synthase-like 188 341 - -
Lan1g1458 1679 MobiDBLite consensus disorder prediction 1289 1543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1458 Lan-Chr1 24593332 24605785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1458 1461 1678 C2H2 Transcription Factor Family AT3G48430 55.652 1.03e-68 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan1g1458 JmjC 3e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1458 - - lang:109362418 2729.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1458 1 24593332 24605785 Lan1g1458 1 24593332 24605785 ECH
Lan1g1458 1 24593332 24605785 Lan1g1942 1 34669731 34678070 LSH
Lan1g1458 1 24593332 24605785 Lan17g0134 17 799093 815183 PCT