Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1454 ATGAGTTACATCACAACCACTTCACTCTCTTTGTTCTTCTTTCTTTTCTCTTTCTTCACCTTTATTTCCTCTTCACCACTTCAGGACCCTGAATTGGTGGCACAAGAAGTAAACAGGAAAATCAATGCCTCTATTGCTAGGAGGAACTTGGGGTACCTCTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCCAACTGGGAGAAGAATAGACAAAGGCTAGCAGATTGTGCAATTGGGTTTGGCAAAAATGCAATTGGTGGAAAAGGTGGTAAAATTTATGTGGTCACTGACTCTGGTGATGATGACCCTGTGACCCCAAAGCCAGGGACACTTCGTTATGCAGTGATTCAAGATGAGCCATTATGGATCATATTTCAAAGAGACATGGTTATTAAGCTAAAGGAAGAGCTCATAATGAATTCATTCAAAACCATTGATGGAAGAGGTGCTAGTGTTCACATTGCTGGCGGTCCATGCATTACTATACAATATGTAACAAATGTTATAGTCCACGGGATTAATATACATGATTGTAAGCAAGGTGGTAATGCTATGGTGAGAGACTCCCCAAGGCACTATGGGTGGAGAACCATATCTGATGGTGATGGTGTTTCAATCTTTGGTGGATCTCATATATGGGTGGATCATTGTTCTTTGTCTAATTGCAATGATGGGTTAATTGATGCTATTCATGGGTCCACAGCTATTACCTTATCCAACAATTACATGACACACCATGACAAGGTTATGTTATTGGGTCATAGTGATACATATACTCAAGACAAGAACATGCAAGTCACAATAGCTTTTAATCACTTTGGAGAAGGGCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTCCATGTGGTGAACAATGACTATACCCATTGGGAAATGTATGCCATAGGGGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAATAGGTTTGTTGCACCCAATGACAGATTCAGCAAAGAGGTAACAAAACATGAGGATGCACCAGAGAATGAATGGAAAGGGTGGAATTGGAGGTCAGAAGGAGATTTGCTAGTAAATGGTGCATTTTTTACAGCATCAGGTGCTGGAGCTTCATCTAGTTATGCTAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCTCTTGTGGGGTCCATAACAACTGGTGCTGGTGCACTCAGCTGTAGGAAAGGTTCTAGTTGCTGA 1224 0.4183 MSYITTTSLSLFFFLFSFFTFISSSPLQDPELVAQEVNRKINASIARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKGGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFQRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGINIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITLSNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPENEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCRKGSSC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1454 407 PANTHER PECTATE LYASE 18-RELATED 8 404 IPR045032 GO:0030570
Lan1g1454 407 PANTHER PECTATE LYASE 8 404 - -
Lan1g1454 407 Pfam Pectate lyase 140 324 IPR002022 -
Lan1g1454 407 Gene3D - 58 400 IPR012334 -
Lan1g1454 407 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Lan1g1454 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Lan1g1454 407 SMART amb_all 133 330 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1454 Lan-Chr1 24543802 24546999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1454 8 407 Polysaccharide Lyase AT5G63180 80.893 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1454 K01728 - gmx:100101868 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1454 1 24543802 24546999 Lan1g1454 1 24543802 24546999 ECH
Lan12g0794 12 15146655 15152242 Lan1g1454 1 24543802 24546999 LSH