Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1449 ATGTCTATCACAACGATGCCTATGTTCAATTCCCTCACAATAGCAGAACCATCTTTATTCTCTCTTCCCTCACTCACCAAATCCAAATACCCAATTCTCCCAAATCCTCATAAGCATATAAAGCTTCAACTTTCATGCTCCTACTCTTCACTCTTTTCACCCTCTCTTTCTCTCTGCACCAGGAGAACCCACAATTCCCCTGTTCTCACATTTGTAGCACAAACTTCAGATTGGGCTCAACAAGAAGAGAAAGAAGAAGGTGAAGAGGGAGAACCCACATGGGAAAACCAAGATGCTGTTGATGAAAGAGAAGAAGGAGAGAGTGCTCAAGATGGGAACTTTGAAGAGAAGGGTTTTGATGAACCATCTGATGATGCAAAAATCTTTGTTGGGAACTTGCCATTTGATGTGGACAGTGAGAAACTGGCCATGCTTTTTGAGACCGCTGGGACTGTGGAGATTGCAGAGGTCATTTATAATAGGGCGACCGACCAAAGTCGCGGATTTGGATTTGTAACCATGAGTACAGTTGAAGAAGCTGAGAAAGCTGTGGAGAAGTTCAGTGGCTATGATTTTAATGGAAGACTCTTGACTGTTAACATTGCTGCTCCAAGAGGAGCAAGGCAGGAGCGCCCACCGCTTGCCTTTGATAATACCTTAAGACTCTATGTTGGTAATTTGCCATGGAGTGTTGACAATGCTCGGCTGGAGCAAATTTTCAGCGAACATGGTAAGGTTGAGAATGCTCGGGTAGTGTATGACAAAGAGACTGGTCGATCACGCGGTTTTGGCTTTGTCAAATTTTCCAGCGAGGCTGAAATTAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGATGGGAGGGCAATCAGAGTGAATGTTGCTGAGGATAGGCCAAGGCGTGCCTCCTTTTAA 918 0.4477 MSITTMPMFNSLTIAEPSLFSLPSLTKSKYPILPNPHKHIKLQLSCSYSSLFSPSLSLCTRRTHNSPVLTFVAQTSDWAQQEEKEEGEEGEPTWENQDAVDEREEGESAQDGNFEEKGFDEPSDDAKIFVGNLPFDVDSEKLAMLFETAGTVEIAEVIYNRATDQSRGFGFVTMSTVEEAEKAVEKFSGYDFNGRLLTVNIAAPRGARQERPPLAFDNTLRLYVGNLPWSVDNARLEQIFSEHGKVENARVVYDKETGRSRGFGFVKFSSEAEINDAIAALDGQSLDGRAIRVNVAEDRPRRASF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1449 305 CDD RRM_HP0827_like 127 204 - -
Lan1g1449 305 MobiDBLite consensus disorder prediction 106 121 - -
Lan1g1449 305 Gene3D - 72 210 IPR012677 -
Lan1g1449 305 Gene3D - 211 304 IPR012677 -
Lan1g1449 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Lan1g1449 305 SUPERFAMILY RNA-binding domain, RBD 122 213 IPR035979 GO:0003676
Lan1g1449 305 CDD RRM_HP0827_like 221 297 - -
Lan1g1449 305 PANTHER RIBONUCLEOPROTEIN 1 91 - -
Lan1g1449 305 PANTHER RIBONUCLEOPROTEIN 108 305 - -
Lan1g1449 305 SUPERFAMILY RNA-binding domain, RBD 212 302 IPR035979 GO:0003676
Lan1g1449 305 MobiDBLite consensus disorder prediction 82 105 - -
Lan1g1449 305 MobiDBLite consensus disorder prediction 77 121 - -
Lan1g1449 305 PANTHER OS02G0815200 PROTEIN 1 91 - -
Lan1g1449 305 PANTHER OS02G0815200 PROTEIN 108 305 - -
Lan1g1449 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Lan1g1449 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Lan1g1449 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Lan1g1449 305 SMART rrm1_1 127 200 IPR000504 GO:0003723
Lan1g1449 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1449 Lan-Chr1 24443717 24447130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1449 128 305 Eukaryotic Initiation Factors Gene Family AT3G16380 27.528 5.72e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1449 - - hbr:110672501 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1449 1 24443717 24447130 Lan1g1449 1 24443717 24447130 ECH
Lan12g0799 12 15181448 15184185 Lan1g1449 1 24443717 24447130 LSH