Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1433 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGATGAAGATGAAAAGCTCTTCAATTACATAACCAGATTTGGTGTTGGGTGCTGGAGTTCTGTTCCTAAACTTGCTGGACTTCAAAGATGTGGAAAGAGTTGCAGGCTAAGATGGATAAATTATTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCACAGCAGGAAGAGGATTTTATAATAAGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATTGCAGCACAAATACCTGGAAGAACAGACAATGAAATAAAAAACTTTTGGAATTCATGTTTGAAGAAGAAGCTATTGAAGCAAGGGATTGACCCAACAACACATAAGCCTCTCAATGAAGCTAATGTGAAGGAAGAGAAAACAATCATAGAGTCACCACAATCTATGCAAATACCATTCTCACAAGTGCATTCAGCTACAATATCAACCTTATTACCTTCATCATCACAAGGTTCACCACTTCTAATAAGTGATTCAAATTACTATGATGATGGCAGGTTAGCAGAAACTTCAAGAGAAATTTTCATGAGCAAGGAAGCATTAGACCCTTTGTCTTACTATGATAATTTCCAAATGATTGTTGAACAAAATTCTGATTATGGTTTACCTGAGAGTACTAATTATCAAACAAGCATTATAACATTGTTCGATGAGAATCAGTTTGCAACAAATTCAAACTATTGTTTCCCTTCAATGCCAAGCCTAACCAATTCGGATCGCGTATCGATGACAGAGTTTTCTTCAGACAACAACTCAGGTTCTAAAATCAGCTCGTTGTTCATGAATGATAATAATAATCAGGTGAAAGAAAGTTCAAGCAATAATAGCTCAAACATGTGCATTTATACATCAGAAGGAGGGTGTCATCAAATGATGGAAAATGCTGCAGGGTTCTCTTGGGATGCTGAGAACAAATTAGACCCTTTGTTTCGGTTTAATGCAATAAAATCAGAAGATTCCAAGACATGTAATTCGTGGGAAGAAGGGCAACAGCATTTGCAGACTCATGGTTCAATAGATTTCAGTAGCTATCCATTAACATCACTGTCAGAAGATTTAACAGGAACAAGCTTTGATGTATTCCAGCATATATGA 1149 0.3699 MGRHSCCVKQKLRKGLWSPDEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDFIISLHEVLGNRWAQIAAQIPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLNEANVKEEKTIIESPQSMQIPFSQVHSATISTLLPSSSQGSPLLISDSNYYDDGRLAETSREIFMSKEALDPLSYYDNFQMIVEQNSDYGLPESTNYQTSIITLFDENQFATNSNYCFPSMPSLTNSDRVSMTEFSSDNNSGSKISSLFMNDNNNQVKESSSNNSSNMCIYTSEGGCHQMMENAAGFSWDAENKLDPLFRFNAIKSEDSKTCNSWEEGQQHLQTHGSIDFSSYPLTSLSEDLTGTSFDVFQHI* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1433 382 CDD SANT 70 109 IPR001005 -
Lan1g1433 382 SMART sant 13 63 IPR001005 -
Lan1g1433 382 SMART sant 66 114 IPR001005 -
Lan1g1433 382 CDD SANT 17 61 IPR001005 -
Lan1g1433 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan1g1433 382 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan1g1433 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan1g1433 382 Gene3D - 11 67 - -
Lan1g1433 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan1g1433 382 Gene3D - 69 142 - -
Lan1g1433 382 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan1g1433 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan1g1433 382 PANTHER MYB TRANSCRIPTION FACTOR 1 376 - -
Lan1g1433 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan1g1433 382 PANTHER MYB DOMAIN PROTEIN 55 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1433 Lan-Chr1 24169409 24171284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1433 1 137 MYB Transcription Factor Family AT1G57560 78.832 1.83e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan1g1433 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1433 K09422 - gmx:100811140 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1433 1 24169409 24171284 Lan1g1433 1 24169409 24171284 ECH
Lan12g0815 12 15270274 15272223 Lan1g1433 1 24169409 24171284 LSH
Lan1g1433 1 24169409 24171284 Lan1g1954 1 34790012 34803882 LSH