Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1415 ATGCAAGACTTTCAGCATATTGATCAGTTTCATCATGCTAATGCCTCCTCACCCAATCAAGTTTTTGGGGTCCAAACTCAAAATCTTGATCCTTTTGCTAATGTAACATGTGGGTGTTCAAAGGCAGAGTTTGATGGTTATGATGGCAAGGCTTTTGTTGAGAATAATGGTAGTAGTAGCCATGCTCATGTTATAGACAATTTTCAATATGAAGGCTATGGATTGAATCCCCACAGGAGGAGTCAAATGAATATGATGGCTTCAAACCAAAGCTATTTGCCTTTTAATCCCTTAGAAACCAAGCCTTCAAACTTTGTTGCACCTGATGAAGTCTCATGCATATCACCAGCAGTTTATTACAATAGAATTGGCTTGAATAGAAGTAATAAGACATCTCTAACCACTACAAGATCCTGCAAAGTTAGGAAGAAGACCAACATAGTGAAGGGGCAATGGACTGAAAATGAAGACAGATTGTTGATTCAATTGGTGGAACAATATGGAGTGAGGAAGTGGGCTCATGTTGCTCAGTCATTGCCTAGCAGAATTGGCAAACAGTGCAGAGAGAGATGGCATAACCATTTAAGACCTGACATTAAGAAGGAAGTGTGGACTGATGAAGAGGATAAGATACTGATCCAAGCACATGCAGGGATAGGAAATAAGTGGGCAGAGATTGCAAAAAGATTACCAGGAAGAACTGAGAACTCAATCAAAAACCACTGGAATGCAACAAAAAGAAGGCAATATTCCAAAAGAAAATGCTGCTCAAAGTACCCTAGAGGCACTATTCTTCAAGATTATATCAAGAGCTTAAACTTGAACAAAAACACTCCAAAAGACTATACAACACAACCCTCTTCTAATACTATGAGAAAAAAAGCTAGCACAATCAAATCAGCAGCAGCAGCTAGAGCTACTCAACCACATAGTACAAGTCAAGTTAGTTCTAATGACGGGTTGGTGCCAAATTATGAGTTTAATGAGGACCCAGATTTTTGTTTCCATGATAATATGTTTCAAGATGGGTGTAGTATTGATTCTTTGCTAGATGATATGCCATGTGCTCCTACTACAAATGAGAAAGATTTTGATGCAAAAGTGCTATGTGGTTCTAATAACAAGAAGGTAAAACAAGTTGTGAATGTTGATGAGCATAATCATTTTGAGACAGAGATGGCACAAGAGGTGGAGGGTAATGAAGTTCAGAAGGAGCTGGATTTGGTGTCTCAGGTTAATCAAAGTAATAATGACCAAGACCCTGGCAGCAATTATAATTAA 1281 0.3849 MQDFQHIDQFHHANASSPNQVFGVQTQNLDPFANVTCGCSKAEFDGYDGKAFVENNGSSSHAHVIDNFQYEGYGLNPHRRSQMNMMASNQSYLPFNPLETKPSNFVAPDEVSCISPAVYYNRIGLNRSNKTSLTTTRSCKVRKKTNIVKGQWTENEDRLLIQLVEQYGVRKWAHVAQSLPSRIGKQCRERWHNHLRPDIKKEVWTDEEDKILIQAHAGIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCCSKYPRGTILQDYIKSLNLNKNTPKDYTTQPSSNTMRKKASTIKSAAAARATQPHSTSQVSSNDGLVPNYEFNEDPDFCFHDNMFQDGCSIDSLLDDMPCAPTTNEKDFDAKVLCGSNNKKVKQVVNVDEHNHFETEMAQEVEGNEVQKELDLVSQVNQSNNDQDPGSNYN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1415 426 ProSiteProfiles Myb-like domain profile. 196 246 IPR001005 -
Lan1g1415 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 250 IPR017930 -
Lan1g1415 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 199 IPR017930 -
Lan1g1415 426 CDD SANT 204 246 IPR001005 -
Lan1g1415 426 SMART sant 200 248 IPR001005 -
Lan1g1415 426 SMART sant 148 197 IPR001005 -
Lan1g1415 426 SUPERFAMILY Homeodomain-like 146 242 IPR009057 -
Lan1g1415 426 Pfam Myb-like DNA-binding domain 202 243 IPR001005 -
Lan1g1415 426 Pfam Myb-like DNA-binding domain 149 195 IPR001005 -
Lan1g1415 426 Gene3D - 148 200 - -
Lan1g1415 426 PANTHER MYB PROTEIN-RELATED 49 344 - -
Lan1g1415 426 CDD SANT 152 195 IPR001005 -
Lan1g1415 426 Gene3D - 202 263 - -
Lan1g1415 426 PANTHER BNAC07G50190D PROTEIN 49 344 - -
Lan1g1415 426 ProSiteProfiles Myb-like domain profile. 144 195 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1415 Lan-Chr1 23896517 23898633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1415 44 368 MYB Transcription Factor Family AT4G18770 47.748 2.47e-94 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan1g1415 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1415 K09422 - gmx:100816653 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1415 1 23896517 23898633 Lan1g1415 1 23896517 23898633 ECH
Lan12g0830 12 15419093 15420997 Lan1g1415 1 23896517 23898633 LSH
Lan1g1415 1 23896517 23898633 Lan1g1961 1 34851290 34851992 LSH