Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1408 ATGAAGGAAAACAGTGATGGGTTTGTGAGGGCAGATAAGATTGATTTGAAGAGCATAGATGAACAACTAGAGAGGCATCTGAACAAGGTTTTGACATTGGAGAAGAAAAAGCACATAGAGGAGGAAGATGGTAATCGTGTTCAAATACACAGTGGCAGTGCCAGTAATTCTCCTATTGCTGCTACTAAATTTAGAAGTCCCTTCAAGAAGCAGAGACAGGAGTGGGAGATTGATCCTTCTAAACTGATTATTAAGAGTGTTATAGCTCGTGGCACTTTTGGAACAGTGCACCGTGGTATCTATGATACTCAAGATGTTGCTGTTAAATTGCTGGACTGGGGTGAAGAAGGCCAAAGAACTGAAGCTGAAGTTGCTTCTCTGAGGGCAGCATTTATACAGGAAGTTGCTGTTTGGCATAAACTCGATCATCCTAATGTCACTAAGTTCATAGGAGCAACAATGGGGTCTGCAGAATTACAGATACAAACTGACAACGGTCTAATCGGCATGCCAAGCAACGTTTGTTGTGTTGTTGTGGAATATCTTCCTGGAGGTACACTGAAAAATTTCCTAATAAAGAACAGGAAGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGCTTGCACTTGATCTCGCGAGAGGGCTGAGTTATCTTCACTCTCAAAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGTCACGCACGGTTAAAATTGCTGATTTTGGGGTTGCTCGTGTTGAGGCATCAAATCCTAATGATATGACCGGGGAGACTGGCACTCTTGGTTACATGGCTCCAGAGGTTCTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTATGGGAAACATATTGTTGCGACATGCCATATCCTGACTTAAGTTTCGCAGAAGTTAGTTCAGCCGTTGTTCGCCAGAATCTGAGACCAGAAATGCCAAGATGTTGTCCAAGTTCTCTAGCAAATGTAATGAAGAAATGCTGGGATGCTAGTCCTGATAAGCGGCCGGAGATGGATGAGGTAGTTTCCATGCTCGAGGCCATTGACACTTCCAAGGGTGGCGGTATGATCCCTCCGGATCAGCAGGAGGGTTGTCTTTGCTTCCGCAAACGTAGAGGGCCTTAA 1158 0.4378 MKENSDGFVRADKIDLKSIDEQLERHLNKVLTLEKKKHIEEEDGNRVQIHSGSASNSPIAATKFRSPFKKQRQEWEIDPSKLIIKSVIARGTFGTVHRGIYDTQDVAVKLLDWGEEGQRTEAEVASLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDNGLIGMPSNVCCVVVEYLPGGTLKNFLIKNRKRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKSRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEMPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPPDQQEGCLCFRKRRGP* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1408 385 Gene3D Phosphorylase Kinase; domain 1 70 165 - -
Lan1g1408 385 SMART serkin_6 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1408 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lan1g1408 385 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Lan1g1408 385 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Lan1g1408 385 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Lan1g1408 385 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Lan1g1408 385 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 379 - -
Lan1g1408 385 CDD STKc_MAP3K-like 88 356 - -
Lan1g1408 385 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Lan1g1408 385 Gene3D Transferase(Phosphotransferase) domain 1 182 369 - -
Lan1g1408 385 Coils Coil 16 36 - -
Lan1g1408 385 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1408 385 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 379 - -
Lan1g1408 385 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1408 Lan-Chr1 23816867 23823212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1408 1 317 MAP Kinase Kinase Kinase AT5G50000 80.251 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan1g1408 PK_Tyr_Ser-Thr 2.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1408 - - gmx:100807921 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1408 1 23816867 23823212 Lan1g1408 1 23816867 23823212 ECH
Lan12g0841 12 15503807 15509897 Lan1g1408 1 23816867 23823212 LSH
Lan1g1408 1 23816867 23823212 Lan1g1969 1 34912985 34916608 LSH