Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1400 ATGGCAACATTTGGAGGCACTACCCAAAAATGCAAAGTATGTGAAAAAAAAGTGTATTGGGTTGAAGAGCTCATTGCTGACAACAAGGTCTATCACAAATCTTGCTTCAAATGTTACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCTTTTGAGGGTGTTCTATATTGTAAGCCTCATTTTAATCAACTCTTTAAGATGACTGGTAGCTTGGACAAAAGTTTTGAAGGTATCACAAGAATTGCTAAAGTTGATAGGTCTGTTGATCAGATCCAAACCAATAGCAAGGTTTCAAGCTTGTTTGTTGGAACTCAAGAAAAGTGCGTTGGTTGCAAGAAAACAGTGTACCCTATTGAAAAGGTAGCAGTTGATGACAAAAATTACCATAAGGTTTGTTTCAGGTGCACTCATGGAGGTTGTGTAATAAGCCCATCAAATTATGTAGCACATGAACATCGCCTTTATTGTAGGCACCACCATACTCAGCTTTTCAGGCAGAAGGGTAACTTCAGTCAATTTGATAAGCATGAAAATGGTGAAGAAAAGACTGAGAATGCAAAACATGAGTAA 576 0.3802 MATFGGTTQKCKVCEKKVYWVEELIADNKVYHKSCFKCYHCKGTLKLSNYCSFEGVLYCKPHFNQLFKMTGSLDKSFEGITRIAKVDRSVDQIQTNSKVSSLFVGTQEKCVGCKKTVYPIEKVAVDDKNYHKVCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFRQKGNFSQFDKHENGEEKTENAKHE* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1400 191 PANTHER OS06G0237300 PROTEIN 1 181 IPR045268 GO:0051015
Lan1g1400 191 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lan1g1400 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lan1g1400 191 SMART lim_4 10 62 IPR001781 -
Lan1g1400 191 SMART lim_4 109 161 IPR001781 -
Lan1g1400 191 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 181 - -
Lan1g1400 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Lan1g1400 191 Gene3D Cysteine Rich Protein 104 174 - -
Lan1g1400 191 Gene3D Cysteine Rich Protein 6 75 - -
Lan1g1400 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lan1g1400 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Lan1g1400 191 Pfam LIM domain 110 165 IPR001781 -
Lan1g1400 191 Pfam LIM domain 11 66 IPR001781 -
Lan1g1400 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lan1g1400 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1400 Lan-Chr1 23746793 23749447 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan1g1400 LIM 1.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1400 K09377 - gmx:100792627 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1400 1 23746793 23749447 Lan1g1400 1 23746793 23749447 ECH