Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1393 ATGGTTATCGCCGGCGAAGTTTTCAGGCAGAATTTGCCGGAATATTTAGAGGAGTCACCTTCTGGTGCAGGGGAGCTTCATGTTCTTGCTGTTGATGATAGCTTCGTCGATCGCAAGGTTATTGAACGATTGCTTAAGGTTTCATCTTGCAAAGTAACAGTTGTAGAAAGTGGAACCAGAGCTCTTCAATATTTAGGGTTAGATGGAGACAAAAACTCATTTGGTTTTGATAGTGTGAAGGTTAATATGATAATGACCGATTATTCCATGCCTGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCATCTGTTTTTAGAGAGATACCGGTGGTGATCATGTCTTCGGAGAATATCATAACTCGAATTGATAGGTGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTCAAGTTGGCAGATGTAAGACGCTTAACAGATTTCATCACGAGAGGTGAGGTGAAGGAAGAAGTTAAAACATCAAAGAAAAGAAAGCTATCCGATGGTTGCAGTCCATCTCTATCAACTACGTTCTCGTCAGTTTCTCAACCAAGAGATCCATCATTGTCAGGACTTTCACCACTATCACCATCCTCATTGTCCTCCAAGAAGTCTAGATTGTGTTCAGAGATTTAG 648 0.4151 MVIAGEVFRQNLPEYLEESPSGAGELHVLAVDDSFVDRKVIERLLKVSSCKVTVVESGTRALQYLGLDGDKNSFGFDSVKVNMIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENIITRIDRCLEEGAEEFLLKPVKLADVRRLTDFITRGEVKEEVKTSKKRKLSDGCSPSLSTTFSSVSQPRDPSLSGLSPLSPSSLSSKKSRLCSEI* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1393 215 MobiDBLite consensus disorder prediction 169 215 - -
Lan1g1393 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 211 IPR045279 GO:0009736
Lan1g1393 215 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Lan1g1393 215 CDD REC_typeA_ARR 28 149 - -
Lan1g1393 215 MobiDBLite consensus disorder prediction 171 215 - -
Lan1g1393 215 SMART REC_2 26 150 IPR001789 GO:0000160
Lan1g1393 215 SUPERFAMILY CheY-like 25 152 IPR011006 -
Lan1g1393 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 10 211 - -
Lan1g1393 215 Gene3D - 26 187 - -
Lan1g1393 215 ProSiteProfiles Response regulatory domain profile. 27 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1393 Lan-Chr1 23659532 23661919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1393 5 170 Response Regulator Gene Family AT3G48100 68.639 1.22e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan1g1393 Response_reg 1.9e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1393 K14492 - gmx:100527518 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1393 1 23659532 23661919 Lan1g1393 1 23659532 23661919 ECH
Lan12g0856 12 15621542 15624155 Lan1g1393 1 23659532 23661919 LSH