Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1388 ATGTCTCGCACCTTCGCCGCCGCTGACTCCGCCGTCTCCGGTGAAATCATGCTGTTCGGAGTTAGAGTGGTAGTTGATTCAATGAGGAAGAGTGTGAGTATGAATAATCTCTCACAGTACGAGCTTCCTCAAGATCCCTCTTCCAACAACACCGGCAACAAATATGATATTCCCGCCAGTTATGCCTCAGCTGATGACGCCGTCCCACATAACTCCGGCAAGCACCGCGAGCGCAAGCGAGGGGTTCCATGGACGGAGGAAGAGCATAAGCTGTTCTTGGTGGGACTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGAATCTCCAGGAACTATGTCAAGACCCGAACACCTACCCAGGTTGCTAGCCATGCTCAGAAATACTTTCTCCGCCACACTAACCTTAATCGCCGTCGCCGTAGATCTAGCCTCTTTGACATCACCACTGACATGGTCCCAATGGAGGAAGAACAGATCCAGAATCAAGATAGTGTGTCTCATTCACAGCCCATGTACCCTGCAGCCACTGAAACTAGCAACATGAATGGATTCCAAATGATGCCGATGTATCCGGTGGGTGCTGGTTCTGGAATGTTTTCAATCCAGGCTGAGAATCCAATGGAAGAACTCACTCTGGGACAAGGAAGCATGGAACACAACGTTTCAACCAACCCAGTTCTTCCAATTCCTAAAGCTTCCACAGTGTCTGATATTGCCTCCAATTCAAGTTCAACTATTGACCCACCAACACTGTCCCTTGGGCTATCTTTCTCATCTGATCAAAGGCAAACATCATCAAGACATTCACCTTTACATGGAATGCCTCATTTCAATAATGGAGATAGCATCATAAGTGTTGCTTGA 861 0.482 MSRTFAAADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPQDPSSNNTGNKYDIPASYASADDAVPHNSGKHRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRHTNLNRRRRRSSLFDITTDMVPMEEEQIQNQDSVSHSQPMYPAATETSNMNGFQMMPMYPVGAGSGMFSIQAENPMEELTLGQGSMEHNVSTNPVLPIPKASTVSDIASNSSSTIDPPTLSLGLSFSSDQRQTSSRHSPLHGMPHFNNGDSIISVA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1388 286 MobiDBLite consensus disorder prediction 39 57 - -
Lan1g1388 286 SUPERFAMILY Homeodomain-like 78 132 IPR009057 -
Lan1g1388 286 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 286 - -
Lan1g1388 286 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Lan1g1388 286 PANTHER KIN2 13 286 - -
Lan1g1388 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Lan1g1388 286 CDD SANT 83 128 IPR001005 -
Lan1g1388 286 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Lan1g1388 286 ProSiteProfiles SANT domain profile. 79 132 IPR017884 -
Lan1g1388 286 Gene3D - 82 135 - -
Lan1g1388 286 MobiDBLite consensus disorder prediction 237 286 - -
Lan1g1388 286 SMART sant 80 130 IPR001005 -
Lan1g1388 286 MobiDBLite consensus disorder prediction 39 58 - -
Lan1g1388 286 MobiDBLite consensus disorder prediction 63 82 - -
Lan1g1388 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Lan1g1388 286 MobiDBLite consensus disorder prediction 237 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1388 Lan-Chr1 23592596 23594870 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan1g1388 Myb_DNA-binding 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1388 - - aip:107632799 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0860 12 15679542 15681766 Lan1g1388 1 23592596 23594870 LSH
Lan1g1388 1 23592596 23594870 Lan1g1985 1 35038625 35040709 LSH