Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1385 ATGAAGCCTCCTATCATCAATGACTCCACATTCTCTAATATTTGGCCTATGCATCCTCAAAACATTGATGCCTCTACCAATAACTCCACCACCACCCAAAATTCTGTATATCAAAGGAAAAGAAAGAACACCATCACTCCTAATCACTTGACTGATTCTCGCAACAAACATACAAAATTAACCGAAGCGAATACGAGTTCAGCAGCCACTAACAAACTAGATGAACAAAGCACTAAACCTAAGCAAGACTATATACATGTCAGAGCAAGAAGGGGCCAAGCCACTGATAGCCACAGTATTGCAGAGAGGGCAAGAAGAGAAAAGATCAGTGTGAGGATGAAGATTCTTCAAGATATAGTCCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTAGATGAGATAATCAATTATATTCAGTCATTGCAGCTGCAGGTTGAGTTCCTTTCGATGAAGCTTGAAGGAGTTAATTCGACATTGAACAAGAACCCAACTATTGAGTACCTTTCATCAAATTTGTTCCATTTAGAGAAGTTGGTACTCAGGCATTGGACTTTGCCGGAATGA 570 0.4 MKPPIINDSTFSNIWPMHPQNIDASTNNSTTTQNSVYQRKRKNTITPNHLTDSRNKHTKLTEANTSSAATNKLDEQSTKPKQDYIHVRARRGQATDSHSIAERARREKISVRMKILQDIVPGCNKVIGKALVLDEIINYIQSLQLQVEFLSMKLEGVNSTLNKNPTIEYLSSNLFHLEKLVLRHWTLPE* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1385 189 MobiDBLite consensus disorder prediction 18 81 - -
Lan1g1385 189 CDD bHLH_AtBPE_like 83 166 - -
Lan1g1385 189 SMART finulus 99 149 IPR011598 GO:0046983
Lan1g1385 189 MobiDBLite consensus disorder prediction 60 75 - -
Lan1g1385 189 Gene3D - 90 169 IPR036638 GO:0046983
Lan1g1385 189 MobiDBLite consensus disorder prediction 18 51 - -
Lan1g1385 189 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 168 IPR024097 GO:0006355
Lan1g1385 189 Pfam Helix-loop-helix DNA-binding domain 97 144 IPR011598 GO:0046983
Lan1g1385 189 PANTHER TRANSCRIPTION FACTOR BHLH63 20 168 - -
Lan1g1385 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983
Lan1g1385 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 143 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1385 Lan-Chr1 23576381 23578498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1385 51 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 66.667 2.68e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan1g1385 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1385 - - lang:109357181 369.007