Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1359 ATGATCATAATGGACTTAGATCACACTATCAAAGGATCAGAAGCGGTTACTGAACCGAAGAAAACTTGCACTGATTGCGGTACTTCCAAAACTCCTCTCTGGAGAGGTGGACCCGCTGGTCCAAAGTCACTTTGCAATGCTTGCGGGATCAGAAGCAGGAAGAGGAAGAGAGCGATTTTAGGTTTGAGTAAGAGTAACAGTGATGTGATTAGGAAGGGGAAAAGGAGTAATAATAAGATTGGGGGAAGTTTGAAGCAGAGGTTGTGGAATTTAGGGAAAGAAGTTATGATGCAGAGATCTACTATGATGAAGAAATTTGGTGAAGAGGAACAAGCTGCTGTTGTTTTAATGTGTCTTTCTTATGGATCTGTTTATGCTTAA 381 0.4121 MIIMDLDHTIKGSEAVTEPKKTCTDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRKRAILGLSKSNSDVIRKGKRSNNKIGGSLKQRLWNLGKEVMMQRSTMMKKFGEEEQAAVVLMCLSYGSVYA* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1359 126 ProSitePatterns GATA-type zinc finger domain. 23 48 IPR000679 GO:0006355|GO:0043565
Lan1g1359 126 SMART GATA_3 17 70 IPR000679 GO:0006355|GO:0043565
Lan1g1359 126 Pfam GATA zinc finger 23 56 IPR000679 GO:0006355|GO:0043565
Lan1g1359 126 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 58 - -
Lan1g1359 126 Gene3D - 18 82 IPR013088 GO:0006355|GO:0008270
Lan1g1359 126 CDD ZnF_GATA 22 75 IPR000679 GO:0006355|GO:0043565
Lan1g1359 126 ProSiteProfiles GATA-type zinc finger domain profile. 17 53 IPR000679 GO:0006355|GO:0043565
Lan1g1359 126 PANTHER OS01G0976800 PROTEIN 13 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1359 Lan-Chr1 23297086 23298040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1359 13 126 C2C2-Gata Transcription Factor Family AT3G06740 62.185 1.16e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan1g1359 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1359 - - twl:120000093 164.851