Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1355 ATGATGATGACAAATAACTTAGCGGAAGAGTTAGTGGGTTCAGAGATACATGGGTTCCACACAATGCAAGAGCTGGATGTGGGAAGCATTATGAAGGAAGCAAGAACAAGATGGCTTCGTCCGAATGAGATTCATGCCATACTTTGCAATCCCAAGTATTTTACCATCCATGTCAAGCCAGTGAATTTGCCTAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCATAACTGGAAAAAGAAAAAAGATGGGAAAACTGTTAAAGAAGCTCACGAGCACTTAAAGGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCGGGCTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTGTGGAACACATAGTTCTTGTTCATTACCGTGAAACACAGGAGGTGCAAGGTTCTCCTGTCACTCCTGTGAATTCAAACTCTAGTTCTTCTGATCCAGTCGCACCATGGATTATATTAGAAGAAATAGATTCGGGGACCAACACTTCATATGCTGGTGAGATTAATCACAATTCAGCAGCCAAAAGTCATGAACTGAGGCTTCACGAGATAAATACACTTGAATGGGATGACCTAGTGCTTGCAAATGATCTTAATACCTCTACTGTGCCTAATGAAGGCAAAGTTCAATTTTTTGATCAACAAAATCAAGCTTTACTGAATAACAGTTTCAACAATGTAGCTAGTGATCGATCTGCAGAAATTTCTTCTTTTGATAATTTAACTCAGCCAATTGCTGGGAGCAATACTGTTCCTTACAATTTTTCAGAAAGTGTTAATCTTCAGACAATAGAGAATCAAGTAAATCCAAAGGAGCACAGGAATGATCCTGTCTCTGCAAGTGGTGTGGGTTCCTTTAACAATGTTGTCAATGACAAATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACATCATGTCTGATTCACCATGTTCAGCAGATGAGTCAGCTCTTGAATCCTCGATTTCATCTGTTCACGATTCTTATTCACCCCTGGTAGTCAATAGTCATCTATCTTCTCTGCCCGAACAAGTATTTAATCTCACTGATGTGTCCCCGGCTTGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGCTGACTGGATTCTTTCATAAGGACTATGAGCACCTCTCAAAGTCCAATCTATTGTGTGTTTGTGGTGATGTAAGTGTTCCTGCAGAAATTGTTCAAGTTGGGGTTTACCGATGCTGGGTATCACCACATTCTCCTGGATTTGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCAATTAGCCAACTTGTTAATTTCGAGTATCGTACTACTGTTTTGCATGATCCTGCAGTTTCTATGGAACAGAAGGACAACTGGGACGAGTTCCAAATTCAAATGAAGCTTGCTCATTTGCTCTTTGCTAAACAAAAGATCCTTGATGTTTTCTCTAGTAACGTGTCACCTAATGCACTAAAGGAGGCCAGACAATTTGCCTTCAAAACGTCATACATTTCCAATAGTTGGCAGTACTTGATGAAGTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCCCTATTTGGGATTGCATTGAAAAACAGACTAAAGGACTGGCTGTTGGAAAGGATTGTTTCAGGCTGTAAGACTACCGAGTTTGATGCGCAAGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGAGTATACTTGGGCTGTTTCCTTATTTTCGTGGGCAGGCTTGTCGCTGGATTTTCGGGATAAATTTGGATGGACAGCTCTTCACTGGGCGGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACGGATCCAAATCCACAAAATCCTGGTGGATGTACTGCTGCGGATATAGCTTATATGAAGGGTTATGATGGCTTAGCAGCATATCTTTCAGAAAAGTCTCTAGTTGAGCATTTCAATGACATGAGCATAGCTGGGAATATTAGAGGCTCACTGGAAACTAGCACGACTGAACCAGTAGGTTATGAGAATCTTACTGAGGACCAGGCATACCTGAAGGATACATTAACAGCTTACCGAACGGCTGCTGAGGCAGCAGCACGCATACAGGCTGCATTTAGGGAGCACTCCCTAAAATTGCGAACGGAGGCAGTTGAATTTTTCAGTCCAGAGGGTGAAGCTCGTGCAATAGTTGCCGCAATGAAGATTCAGCATGCCTTTCGTAACTTTGAGACAAGGAAAATTATGGCAGCTGCTGCTCGCATTCAGCATACATACCGTACATGGAAGACTCGTAAGGAATTTCTCAACATGCGTCGTCAAGCTATCAAAATCCAAGCTGCTTTCCGGTGTTTTAAATTGCGGAAGCATTATCGTAAAATTCTTTGGTCTGTTGGTGTGGTCGAGAAAGCAGTGCTTCGCTGGCGTTTAAAGAGAAGAGGCTTCCGTGGTCTCCAGGTTAATCATGTGGAAGCAGCCGAAGATCAGAAGCAGGAAAGCGATGTTGAGGAGGACTTCTTTCGGACTGGTAGGAAACAAGCTTCAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAAGCCATGTTCCGTTCTAAGAAAGCACAACAAGAATATAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATATGAAGAACTCCTCAACACTGAAGTTGAGATGCAATGCAAGTGA 2766 0.4226 MMMTNNLAEELVGSEIHGFHTMQELDVGSIMKEARTRWLRPNEIHAILCNPKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSVEHIVLVHYRETQEVQGSPVTPVNSNSSSSDPVAPWIILEEIDSGTNTSYAGEINHNSAAKSHELRLHEINTLEWDDLVLANDLNTSTVPNEGKVQFFDQQNQALLNNSFNNVASDRSAEISSFDNLTQPIAGSNTVPYNFSESVNLQTIENQVNPKEHRNDPVSASGVGSFNNVVNDKLQSQDSFGMWVNIMSDSPCSADESALESSISSVHDSYSPLVVNSHLSSLPEQVFNLTDVSPAWVSSTEKSKVLLTGFFHKDYEHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQLVNFEYRTTVLHDPAVSMEQKDNWDEFQIQMKLAHLLFAKQKILDVFSSNVSPNALKEARQFAFKTSYISNSWQYLMKSTEDNKIPFSQAKDALFGIALKNRLKDWLLERIVSGCKTTEFDAQGQSVIHLCAILEYTWAVSLFSWAGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPNPQNPGGCTAADIAYMKGYDGLAAYLSEKSLVEHFNDMSIAGNIRGSLETSTTEPVGYENLTEDQAYLKDTLTAYRTAAEAAARIQAAFREHSLKLRTEAVEFFSPEGEARAIVAAMKIQHAFRNFETRKIMAAAARIQHTYRTWKTRKEFLNMRRQAIKIQAAFRCFKLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVNHVEAAEDQKQESDVEEDFFRTGRKQASERVERSVVRVQAMFRSKKAQQEYRRMKLALNQAKLEREYEELLNTEVEMQCK* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1355 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 819 IPR027417 -
Lan1g1355 921 Pfam Ankyrin repeats (3 copies) 554 634 IPR002110 GO:0005515
Lan1g1355 921 Gene3D - 533 675 IPR036770 -
Lan1g1355 921 SMART iq_5 768 790 IPR000048 GO:0005515
Lan1g1355 921 SMART iq_5 791 813 IPR000048 GO:0005515
Lan1g1355 921 SMART iq_5 871 893 IPR000048 GO:0005515
Lan1g1355 921 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Lan1g1355 921 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Lan1g1355 921 SUPERFAMILY E set domains 369 456 IPR014756 -
Lan1g1355 921 SMART CG_1_2 30 148 IPR005559 GO:0003677
Lan1g1355 921 Coils Coil 885 921 - -
Lan1g1355 921 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Lan1g1355 921 Gene3D - 768 816 - -
Lan1g1355 921 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Lan1g1355 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 921 - -
Lan1g1355 921 SUPERFAMILY Ankyrin repeat 547 667 IPR036770 -
Lan1g1355 921 Gene3D Immunoglobulins 364 459 IPR013783 -
Lan1g1355 921 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 921 - -
Lan1g1355 921 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Lan1g1355 921 SMART ANK_2a 605 634 IPR002110 GO:0005515
Lan1g1355 921 SMART ANK_2a 644 675 IPR002110 GO:0005515
Lan1g1355 921 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Lan1g1355 921 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Lan1g1355 921 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1355 Lan-Chr1 23247182 23256191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1355 30 905 CAMTA Transcription Factor Family AT3G16940 54.886 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lan1g1355 CG-1 4.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1355 K21596 - gmx:100793970 1491.09