Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1354 ATGTTCCTTTTCGATTGGTTCTATGGCATTCTTGCTTCCTTAGGTCTTTGGCAAAAAGAAGCTAAGATCCTTTTCCTTGGTCTCGATAATGCTGGAAAAACCACCCTTCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAACCAACCCAACACCCAACTTCAGAGGAATTGAGCATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGTGGTCATCAAGTTGCTCGTAGAGTCTGGAGAGACTATTATGCTAAGGTTGATGCGGTAGTTTACCTGGTTGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAGGAGCTTGATGCCTTGCTTTCAGATGAATCATTGGCAAATGTTCCATTTCTGGTGCTAGGCAACAAGATCGACATTCCATATGCTGCTTCCGAAGAAGAGCTACGATATCATCTAGGCCTGACCAATTTCACCACAGGAAAGGGAAAGGTAAGTCTTACCGAGTCCAACCTTCGTCCTCTTGAAGTGTTCATGTGTAGCATTGTCCGGAAGATGGGGTATGGTGATGGCTTCAAGTGGGTTTCTCAATATATCAAGTAG 582 0.4347 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWRDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVSLTESNLRPLEVFMCSIVRKMGYGDGFKWVSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1354 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lan1g1354 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Lan1g1354 193 CDD Sar1 2 192 - -
Lan1g1354 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lan1g1354 193 SMART arf_sub_2 4 169 - -
Lan1g1354 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 139 IPR005225 GO:0005525
Lan1g1354 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lan1g1354 193 Gene3D - 1 193 IPR027417 -
Lan1g1354 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Lan1g1354 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1354 Lan-Chr1 23241690 23245929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1354 K07953 - gmx:100810637 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1354 1 23241690 23245929 Lan19g0820 19 14687919 14694650 PCT
Lan19g0820 19 14687919 14694650 Lan1g1354 1 23241690 23245929 PCT