Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1348 ATGGAGGCTGAATTTGTGGAAAAGAATCAATTTTTAAATGGACATGTGGTGCCAGAGATTAAGGGTGTTGGTGTTGATGTTGGGAATGGGAAGAAGAGTTTAGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTATTTCCCTCAACTCAGTTCCATCAGATTTTAGGAGTCACCAGTTTTTCCCATCTCATCCTGAAAATGCTGCTAATGCATCTTACAACTCAAGCCAGGGAAAGAGAGAATTGGAGAAAAGGACAAGAGAGGTTCTTATAGGAGAAGAAGGGAAAGAGGTGCTGAATGATGAAGGTGGTTCCCTTAATTTGAAACTTGGAGGTCAAGTTTATCCTATCATGGAGGAAGGTGAAGAAAAAAGTGGAAAGAAAACAAAGGTAACTATTGGAAGTATTCCTACTACTGCTACTACCTCTAACCGCACTGTTTGTCAGGTTCAAGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCACCGCCGTCACAAAGTTTGTGATTTACATTCAAAGGCTAGTAAGGCACTGGTGGGAAATGTTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTATTCAAGAGTTTGATGAAGGGAAGAGGAGTTGCCGTAGGCGTCTGGCAGGTCACAATAGGAGGAGGAGGAAAACACATCCTGATGTTACTGCAGCTAATGGCGGATCTCTTAATGATGAAAGGGGCAGTAGCTATCTGTTGATGAGTCTGATACAGATACTGTCCAATATGCATTCAAATGGCTCAGATCAAATGAAGGACCAGGATATTCTTTCACATCTGTTGAAGAACCTGGCAAGTATGGCTGGTACAATTAACAGAAGAAGTGTAGCCTCCTTACTAGAAAGATCTCAAGGTTTGGTAAATGCTGAGACACCTAGAACTGCACATGATGTTCCCGACCTTAATTCTAATGGCCGACAAGCTTCCAAGCCTTCTGGTTCTTCCCTCAAGTTGGATGATAATGCTTTCATCCATCAGGACCCTCCTAAGTCTATAGCACAGTGTGAGACAGTGGCTGCTTATAGTATGACACAGAAGTGTATACCTTCAGTTAATGATGGAGCAGGAAATTCTAAATCTCCTTCTGAACCACAGCCTTCAAATGTACTTGCATCAAGGGACAACCTTCCGTCCCAATTGGTTGCATCCGAGACAGCAGCGGGAAGGAACGGCTTAAGTAACATTGACTTGAACAATGTATACAATGATATGCAGGACCATGTTGAGAATCCTAGGGAGCCTTGCCATCCTTCATGGTTACAATGTGACAGTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACTGAGTCACCTTCTAGTTCTAGTGGAGAAGCCCAGAATCGCACAGATCGTATTGTTTTCAAACTCTTCGGCAAGGACCCAAATGAATTTCCTATTCTTCTCCGATCGCAGATCTTCAACTGGTTATCCCGCAGTCCTACAGAGATTGAGAGCTATATACGGCCAGGCTGTATCATATTAACAATATATCTCCGTCTAGAAAAATCTGCATGGAAGGAGCTGTGCTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTGCTGCATCAAACGATTCTTTCTGGAAAACAGGATGGGTATATACAAGGGTGCAACACTCTGTAGCTTTTTTGTATAATGGTCAGGTTGTCTTAGATGTTCCCTTGCATCTCAAAAGCCCGCAAAACTGCAGGATTTTATGCATCAAACCACTTGCTGTTCCTTCAAGCACAAGTGTTCAATTTACTGTGAAAGGGTTCAACCTTTTCCAGTCTAACACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTAGTAAATGATAGGTGCCGTGATTTGATTGATGTGGCTGATGCAGCTATTCAGCATCTTAGCTTCTCATGTCATATACCAAATGTAACTGGAAGGGGGTTTATTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCCGACCAAGATGTTTGTTCAGAGATATGCAAGCTGGAGAATGTGATTGAGGCAGCTGAGGCCACTAATGACATCCAGATGAATAACAAACACACGGAAGAGAAGACTCGGGCTTTGGATTTCTTACAAGAAATGGGTTGGATACTTCATAGAAGGAGTGTGAAGGTTAGGCTAGGTGCAAATGCACCTATGCAGGATCTCTTCCATTCCGACCGGTTTATGTGGCTTGTTGACTTCTCCATGGATCATGATTGGTGTGCTGTGATGAAAATGCTCTTGGACATTGTCTTTGAAGGTGGTGTTGATGCAGGAGAGCATAATTCCATTGAGCTTGCGCTGTTAGACATGTGTCTTCTACACAAAGCTGTGAAGAGAAACTATAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAAAACCTCAGATGGTGCAGACAGTAAAGAGAAGCTAGTTGATAGATTCTTATTTAAGCCTGATGCTGTTGGACCTGCTGGATTGACTCCGCTTCATGTTGCAACAAGTATGAACGGCTCAGAGAATGTGTTGGATGCATTAACCGATGATCCTGGACTGGTAGGAATCAAAGCATGGAAAAGTGCCAGGGACAATACAGGTTTGACACCAAACGACTATGCATGCCTCCGAGGCTATTACTCCTACATTCAACTTGTCCAAAGGAAAACAAGCAAGCAAAGTGAAAGACAACATGTGCTTGATATCCCTGGTACTAGTACCCTTGAGGACAATAACACAAAGAGAAAGCACTTAGATATGCATATGACATCTAAAGTTTTTTCAAGTTTTGAGACTGAGAAGATTGGAACCACTAGAATGGCACAACAATGTGGTCTGTGCCAATACAAGGTTGCTTTTTATGGAGGCATGAGAACAAGACTTGTTTATAGGCCTGCAATGCTGTCAATAGTGGCCATTGCAGCTGTATGTGTATGTGTGGCTTTGCTCTTCAAAAGTTCACCTAAAGTTTATTATGTGTTCCAACCCTTCAAATGGGAATCATTGGATTATGGGTTTATCTAA 3072 0.4245 MEAEFVEKNQFLNGHVVPEIKGVGVDVGNGKKSLEWDLNDWKWDGDLFTAISLNSVPSDFRSHQFFPSHPENAANASYNSSQGKRELEKRTREVLIGEEGKEVLNDEGGSLNLKLGGQVYPIMEEGEEKSGKKTKVTIGSIPTTATTSNRTVCQVQDCRADLSNAKDYHRRHKVCDLHSKASKALVGNVMQRFCQQCSRFHVIQEFDEGKRSCRRRLAGHNRRRRKTHPDVTAANGGSLNDERGSSYLLMSLIQILSNMHSNGSDQMKDQDILSHLLKNLASMAGTINRRSVASLLERSQGLVNAETPRTAHDVPDLNSNGRQASKPSGSSLKLDDNAFIHQDPPKSIAQCETVAAYSMTQKCIPSVNDGAGNSKSPSEPQPSNVLASRDNLPSQLVASETAAGRNGLSNIDLNNVYNDMQDHVENPREPCHPSWLQCDSLKSSPPQTSRNSDSTSTESPSSSSGEAQNRTDRIVFKLFGKDPNEFPILLRSQIFNWLSRSPTEIESYIRPGCIILTIYLRLEKSAWKELCCNLGSSLRKLLAASNDSFWKTGWVYTRVQHSVAFLYNGQVVLDVPLHLKSPQNCRILCIKPLAVPSSTSVQFTVKGFNLFQSNTRLLCALEGKYLVNDRCRDLIDVADAAIQHLSFSCHIPNVTGRGFIEVEDHGLSSCSFPFIVADQDVCSEICKLENVIEAAEATNDIQMNNKHTEEKTRALDFLQEMGWILHRRSVKVRLGANAPMQDLFHSDRFMWLVDFSMDHDWCAVMKMLLDIVFEGGVDAGEHNSIELALLDMCLLHKAVKRNYRPMVELLLKFVPVKTSDGADSKEKLVDRFLFKPDAVGPAGLTPLHVATSMNGSENVLDALTDDPGLVGIKAWKSARDNTGLTPNDYACLRGYYSYIQLVQRKTSKQSERQHVLDIPGTSTLEDNNTKRKHLDMHMTSKVFSSFETEKIGTTRMAQQCGLCQYKVAFYGGMRTRLVYRPAMLSIVAIAAVCVCVALLFKSSPKVYYVFQPFKWESLDYGFI* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1348 1023 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 1021 IPR044817 GO:0003677
Lan1g1348 1023 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Lan1g1348 1023 MobiDBLite consensus disorder prediction 437 468 - -
Lan1g1348 1023 MobiDBLite consensus disorder prediction 218 239 - -
Lan1g1348 1023 MobiDBLite consensus disorder prediction 422 468 - -
Lan1g1348 1023 SUPERFAMILY Ankyrin repeat 764 901 IPR036770 -
Lan1g1348 1023 Gene3D - 767 923 IPR036770 -
Lan1g1348 1023 MobiDBLite consensus disorder prediction 313 332 - -
Lan1g1348 1023 MobiDBLite consensus disorder prediction 303 338 - -
Lan1g1348 1023 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Lan1g1348 1023 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 23 1021 - -
Lan1g1348 1023 MobiDBLite consensus disorder prediction 368 387 - -
Lan1g1348 1023 Pfam SBP domain 153 226 IPR004333 GO:0003677
Lan1g1348 1023 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1348 Lan-Chr1 23172724 23178776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1348 12 1021 SBP-box Gene Family AT3G60030 44.681 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan1g1348 SBP 4.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1348 - - gsj:114419913 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1348 1 23172724 23178776 Lan14g0074 14 1035769 1045327 PCT
Lan14g0074 14 1035769 1045327 Lan1g1348 1 23172724 23178776 PCT