Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1336 ATGGAAACATTAGAACTAATTGATGCTCATCAAATTCAGTCTTCTTCATCTTCATCTTCTTCCATTGATAGCAGCAACCACCCTTCTAAGACACCACCACCCTCTTCATCTTTGAGTTCCTCAAATGTCTTCATAAATAAAGGCAACACCAAAAACATAACTGATTTGAGGAGCACCCTTATTGAGAAACAAAACCAGCATAGACCCTTTTTATTTGTCAAAGTCTACATGGAAGGCATTTCCATAGGCAGAAAATTGGATCTGCTACCACATCATAGCTATGATGGACTTGTAAGAGATCTTAGCCATATGTTTAGGACCAAAATTCTCTACCCTCACTCTCAACCACTTAATTCTCAGAATTTTCATGTTCTAACTTATGAGGATCAAGAAGGGGACTGGATGATAGTTGGAGATGTGCCATGGGAGATGTTCTTGAATACTGTGAAGAGACTGAGGATCACAAGAGCTGGCAGATACTAG 483 0.3934 METLELIDAHQIQSSSSSSSSIDSSNHPSKTPPPSSSLSSSNVFINKGNTKNITDLRSTLIEKQNQHRPFLFVKVYMEGISIGRKLDLLPHHSYDGLVRDLSHMFRTKILYPHSQPLNSQNFHVLTYEDQEGDWMIVGDVPWEMFLNTVKRLRITRAGRY* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1336 160 ProSiteProfiles PB1 domain profile. 70 159 IPR000270 GO:0005515
Lan1g1336 160 Pfam AUX/IAA family 61 156 IPR033389 -
Lan1g1336 160 MobiDBLite consensus disorder prediction 1 43 - -
Lan1g1336 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 37 159 - -
Lan1g1336 160 MobiDBLite consensus disorder prediction 8 43 - -
Lan1g1336 160 Gene3D - 65 160 - -
Lan1g1336 160 SUPERFAMILY CAD & PB1 domains 68 154 - -
Lan1g1336 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 37 159 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1336 Lan-Chr1 23065728 23067025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1336 74 154 B3 DNA Binding Superfamily AT4G23980 39.506 1.43e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan1g1336 AUX_IAA 4.7e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1336 K14484 - gmx:100527448 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0935 12 16253978 16255618 Lan1g1336 1 23065728 23067025 LSH