Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1330 ATGTTTGTTGTCTTTGCAGAAGTTCCTGTTATGGAGAGTAGTGGTGATAGTAATGTTCATGGAACTAGTGGCAACATGGGTGATGATGGTTTAGTCATGCATTCTTTTGCTAACTGGTCAGCACCATCATCTGAACTGAATGCAGTGAATCCTAGTACAACTCAGTTTACTATCTTTTATAATGGGAATATTTGTGTCTATAATGGAATTCCTGCAGAAAAGGTGCGTGAAATCATGCTTATTGCCGGTGCCTCTGCCAAGTCTGCTGAAGTAAAAAAAGAGAACCCTTTCGCGCCAAACATTCCCACAGGTCCCTCTTCTCCGGAAGGAACCTCTAGCAATCTGGCTTCACAGCAATCAGTTTGTTTTCCTGCAGAAAAGAATCCCATTTGCAGGCTGCAAGAATTTCCACTAGCACGCAGACAATCACTTCAAAGGTTTCTCGAGAAGCGACGAGACAGGTTGGCTAGCAAAGTCCCTTATGCCTCATCAACAATAAAAGGTGCTGATAACAACATAGAGAACAGCTTCTATGCTGATAATAATGCACCAAAGGAGGGATTTCAGCCAAGTATTGCAGCCTCTTGA 588 0.4286 MFVVFAEVPVMESSGDSNVHGTSGNMGDDGLVMHSFANWSAPSSELNAVNPSTTQFTIFYNGNICVYNGIPAEKVREIMLIAGASAKSAEVKKENPFAPNIPTGPSSPEGTSSNLASQQSVCFPAEKNPICRLQEFPLARRQSLQRFLEKRRDRLASKVPYASSTIKGADNNIENSFYADNNAPKEGFQPSIAAS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1330 195 MobiDBLite consensus disorder prediction 93 116 - -
Lan1g1330 195 ProSiteProfiles Tify domain profile. 49 84 IPR010399 -
Lan1g1330 195 SMART tify_2 49 84 IPR010399 -
Lan1g1330 195 Pfam tify domain 51 83 IPR010399 -
Lan1g1330 195 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 177 IPR040390 -
Lan1g1330 195 PANTHER DIVERGENT CCT MOTIF PROTEIN 13 177 - -
Lan1g1330 195 MobiDBLite consensus disorder prediction 166 195 - -
Lan1g1330 195 Pfam Jas motif 137 161 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1330 Lan-Chr1 23022378 23025097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1330 15 170 Tify Gene Family AT5G20900 38.509 1.51e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan1g1330 tify 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1330 K13464 - gmx:100306045 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1330 1 23022378 23025097 Lan15g0210 15 2254191 2257757 PCT
Lan15g0210 15 2254191 2257757 Lan1g1330 1 23022378 23025097 PCT