Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1325 ATGGCCTCACTATCTTACACTTGTTCCAAAATGCCTCCTACCACCTTCATCTTCATGCTGATATTGTTCCTTGGAGTCTTCACCCCATTGGGTTGTAGTGCTCAAACCACTCATTCAGCAGGATCAGCACAACTCAAAGTTTCTCCTTCTGAATTTGTTGGGCTAGTGAGAAAAGTTCTTGATGTTTTGCAACAGGTTTCATCCATTTTATCTAAGTTCAGTAGTGGCTTAGGAGATTCTCGTCTTTCTCATGCCATTTATGATTGTCTTGAATTGCTTGATTTGTCCTCTGATGAACTCACTTGGTCTCAATCTGCTACACAAGCTCCCAAAGGGAAGCATAACAGCACAGGGGACCTAAGCTCAGATTTAAGGACATGGTTAAGTGCTGTCCTTACAAATCCAGAGACATGTTTGGAAGGATTTGAAGGAACCAGCAGCATTGTTAAAGGTCTAGTTTCAATAGGGTTAGGCCAAGTATCCTCATTGGTGAAGCAGCTTCTAACACAAGTGCACCCTACCATAGAGGATCAACCCTTCAACAAGGATCACTACCCTTCATGGATGAAACAAAGGGACAGAAACCTGATCCAATCAAATGGTGTGGTTGCAGATGCTGTTGTGGCTTTAGATGGAAGTGGAAACTATAGTAATGTGATGGATGCTGTGGAAGCAGCACCTGATTATAGCATGAAAAGATATGTGATATATATAAAGAAGGGTGTTTATAATGAATATGTTGAGATTAAAAAGAAGAAATGGAATATTATGATTATTGGAGATGGTATTAATGCTACTGTTATCTCTGGTAACAGGAGTTTTATTGATGGATGGACCACATTTAGATCAGCTACCTTTGCTGTCAGTGGAAGAGGGTTCTTAGCAAGAGACATCACTTTCCAGAACACTGCAGGCCCAGAGAAGCATCAAGCAGTAGCACTAAGATCAGATTCAGACCTATCAGTCTTCTACAAATGTGGCATTTTTGGTTACCAAGATAGCCTCTATACTCACACAATGCGCCAATTCTATAGAGAATGTAAAATAAGTGGCACAGTTGATTTCATATTTGGTGATGCCACTGCAGTGTTCCAAAACTGCCAAATCCTAGCAAAAAAAGGATTACCAAATCAAAAGAACACAATCACAGCACAAGGTAGAAAAGACCCTAATGAATCAACTGGTTTCTCAATCCAATTCAGCAACATAACTGCAGATTATGACCTTATACCATTTATTAACACTACACAAACATATCTTGGGAGACCATGGAAGACATATTCACGTACCATTTTCATGCAATCATATTTGAGTAATGTTATAAGTCCAGAAGGGTGGTTAGAATGGAATGGTAATTTATATTTGAATACATTGTACTATGCTGAGTACTTGAATTATGGATCAGGTGCTGGTATAGTTAATAGGGTGAATTGGACAGGGTACCATGTATTAAATGATTCTAGCATGGCTAGTAATTTTACTGTCACACAATTTATTGAAGGGAATCTATGGTTACCTTCAACAGGTGTGGCTTACACTGCTTGA 1545 0.3922 MASLSYTCSKMPPTTFIFMLILFLGVFTPLGCSAQTTHSAGSAQLKVSPSEFVGLVRKVLDVLQQVSSILSKFSSGLGDSRLSHAIYDCLELLDLSSDELTWSQSATQAPKGKHNSTGDLSSDLRTWLSAVLTNPETCLEGFEGTSSIVKGLVSIGLGQVSSLVKQLLTQVHPTIEDQPFNKDHYPSWMKQRDRNLIQSNGVVADAVVALDGSGNYSNVMDAVEAAPDYSMKRYVIYIKKGVYNEYVEIKKKKWNIMIIGDGINATVISGNRSFIDGWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALRSDSDLSVFYKCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATAVFQNCQILAKKGLPNQKNTITAQGRKDPNESTGFSIQFSNITADYDLIPFINTTQTYLGRPWKTYSRTIFMQSYLSNVISPEGWLEWNGNLYLNTLYYAEYLNYGSGAGIVNRVNWTGYHVLNDSSMASNFTVTQFIEGNLWLPSTGVAYTA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1325 514 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Lan1g1325 514 Pfam Pectinesterase 205 502 IPR000070 GO:0030599|GO:0042545
Lan1g1325 514 PANTHER PECTINESTERASE 47 175 - -
Lan1g1325 514 PANTHER PECTINESTERASE 181 514 - -
Lan1g1325 514 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 47 175 - -
Lan1g1325 514 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 181 514 - -
Lan1g1325 514 SMART PMEI_2 37 170 IPR006501 GO:0004857
Lan1g1325 514 Pfam Plant invertase/pectin methylesterase inhibitor 59 161 IPR006501 GO:0004857
Lan1g1325 514 CDD PMEI-like_4 13 173 - -
Lan1g1325 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 171 IPR035513 -
Lan1g1325 514 SUPERFAMILY Pectin lyase-like 204 513 IPR011050 -
Lan1g1325 514 ProSitePatterns Pectinesterase signature 1. 230 249 IPR018040 -
Lan1g1325 514 Gene3D - 200 514 IPR012334 -
Lan1g1325 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 157 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1325 Lan-Chr1 22961574 22964450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1325 16 514 Carbohydrate Esterase AT3G43270 61.969 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1325 K01051 - gmx:100777500 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1325 1 22961574 22964450 Lan15g0207 15 2230354 2233935 PCT
Lan15g0207 15 2230354 2233935 Lan1g1325 1 22961574 22964450 PCT