Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1319 ATGGCAACTTCTCAGCTCACAGCATCAATGATTTCTAGTAGAAATTTGGCATCATTTGAAGGGTTTCGACTTTCATCTCTTCAATTTCCTTCTATCAGCCATTTAAGAATGGACACTCTTACCCAAAAGTCTTTCCCACGTTTTGTTGTCAAAGCTTCCACTGTTTCTGCCCTCAAGTACACTTCTATTAAGCCTCTAGGTGATAGAGTGCTTGTCAAAATTAATGAAGCGGACGAGAAGAGCGAGGGTGGGATTATACTCCCAACAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGTCGGTTGGGAAGAGCAAAGTGGAAATTAGTGTCAAGACAGGGGCACGAGTTGTGTATTCAAAGTATATAGGGACAGAGGTGGACTTCAATGGCTCAAAACATCTTATACTGAAGGATGATGATATTATTGGCATCCTTGAAACCGATGAGGTCAAGGATCTTAAACCCTTGAACGATAGAATCTTGATACAGGTTGCTCAAGCAGAGGAGAAAACTGCTGGGGGTTTGTTTCTCACAGATGCAACAAAGGATAAACCGTCTATTGGAACGGTGATAGCAGTTGGTCCAGGTTCTGTGGATGAAAAAGGCAATAAAAGACCATTGTCAGTTACACCTGGGAACACAGTTTTGTACTCCAAATATGCTGGGAATGACTTCAAGGCCAAAGATGGTTTTGACTACATTACGTTGAGGGCCTCAGATGTTATTGCTGTTCTCTCCCAGTGA 768 0.431 MATSQLTASMISSRNLASFEGFRLSSLQFPSISHLRMDTLTQKSFPRFVVKASTVSALKYTSIKPLGDRVLVKINEADEKSEGGIILPTTAQTKPQGGEVVAVGEGKSVGKSKVEISVKTGARVVYSKYIGTEVDFNGSKHLILKDDDIIGILETDEVKDLKPLNDRILIQVAQAEEKTAGGLFLTDATKDKPSIGTVIAVGPGSVDEKGNKRPLSVTPGNTVLYSKYAGNDFKAKDGFDYITLRASDVIAVLSQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1319 255 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Lan1g1319 255 SUPERFAMILY GroES-like 61 154 IPR011032 -
Lan1g1319 255 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Lan1g1319 255 SUPERFAMILY GroES-like 160 253 IPR011032 -
Lan1g1319 255 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lan1g1319 255 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457
Lan1g1319 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
Lan1g1319 255 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lan1g1319 255 PANTHER GROES CHAPERONIN 1 254 - -
Lan1g1319 255 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1319 Lan-Chr1 22897932 22900564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1319 1 254 Calmodulin-binding Proteins AT5G20720 68.750 2.55e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1319 K04078 - gmx:100804915 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1319 1 22897932 22900564 Lan1g0445 1 3585135 3588004 LSH
Lan1g1319 1 22897932 22900564 Lan15g0189 15 2040465 2043486 PCT
Lan1g1319 1 22897932 22900564 Lan14g0102 14 1352297 1355064 PCT
Lan15g0189 15 2040465 2043486 Lan1g1319 1 22897932 22900564 PCT
Lan14g0102 14 1352297 1355064 Lan1g1319 1 22897932 22900564 PCT