Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1318 ATGGTGAAGCCAAGCATGGAAAATATGAAGGAGCAAAATGATTTAACTTGTCAGTTCAAGGGTGTTCGAAAGAGGAAGTGGGGAAAATGGGTGTCAGAAATTAGACTACCCAATAGTCGTCAAAGGATTTGGTTGGGATCATTTGATTCAGCTGAGAAAGCCGCACGTGCTTTCGATGCAGCCACATTCTGCTTACGTGGCCGCAACGCCAGGTTTAATTTCCCTGACAACCCACCTGATATTGTTGGTGGCATGTCCATGACACCTTCTGAAATCCAAGCGGCCGCAACCCGTTTCGCAAATTCCGAGCCACATTTGACACATTCGATTCGACCCGCTAAAACTGAATCACATGTGGAGTGCTCTTCGGAGGGGACAATATTGTTGCATGCAGAGTCATCTTCCCAATGTATTTCAGAAGAAACTATGGAAACGGTTAGTGATGTCACATTTAACGGTTTGTTTCCAGATTTGTTTGCACAAATCGGGTCCGGTAACATTAATTTTGCACATGAATATGGGATATTTCCGGGTTTTGATGAATTTAGTGGTCATTACTATGTTCCTGAAATGGAGAGTGTTAACTATTATGGAGAAGAAAATATGGATGGTTTCACAGTTGATGACTCATACTTGTGGAATTTCTAA 648 0.4244 MVKPSMENMKEQNDLTCQFKGVRKRKWGKWVSEIRLPNSRQRIWLGSFDSAEKAARAFDAATFCLRGRNARFNFPDNPPDIVGGMSMTPSEIQAAATRFANSEPHLTHSIRPAKTESHVECSSEGTILLHAESSSQCISEETMETVSDVTFNGLFPDLFAQIGSGNINFAHEYGIFPGFDEFSGHYYVPEMESVNYYGEENMDGFTVDDSYLWNF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1318 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 215 - -
Lan1g1318 215 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Lan1g1318 215 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Lan1g1318 215 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 215 - -
Lan1g1318 215 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Lan1g1318 215 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lan1g1318 215 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lan1g1318 215 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Lan1g1318 215 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Lan1g1318 215 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1318 Lan-Chr1 22886768 22887524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1318 15 215 AP2-EREBP Transcription Factor Family AT1G19210 46.341 1.64e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan1g1318 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1318 - - gmx:732656 258.455