Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1316 ATGTCGAGCTCATCGGAGATTTCAGGTGTTTCCGGTCAGAAGCCACCGGAGAAGTCTACGTTCTCTCAGACTTGTAGTTTGTTGAGCCAATACCTCAAGGAGAAGGGTAGCTTCGGTGATCTTACCCTTGGAATGACATGCACCACTGAAACAAATGGGTCACCTGAGACATCTTGTCTCTCTGCAATGAACTTGTTTCCTAACAAAGAAAACAAAATGACACACCCGAACGTGACAACTATGGATTTTCTCTCTCCACATAATGATTATAGCCCACACTCAACAAAAGAGGTTCCAACTTTGGTCAATCCAAGTGCATTTAAGTCTTTGTGCAAGGAGCCCAAAGCTGCACAATTGACAATCTTTTATGGGGGCCAAGTTATTGTATATGATGATTTTCCTGCTGATAAAGTTGATGAGATAATGTCCTTGGCGAGAAAAGGAATCTCCCAAAACCAGAATACCTCTGTACATGCTCATACTCAGCCTTCAATGATTCAGGAGCACCCTCATGCACCACCCTCACCAATTGTTTGTGATCTACCAATTGCTAGGAAAGCTTCTCTTCATCGTTTCCTGGAGAAGAGGAAGGATAGAATTGCTTCCAAAGCTCCATATCAAACAAGCAATCCCATGACAGCACCTAATAAGCTAGCTGAATCAATGGCATGGCTTGGCTGCTAA 684 0.4342 MSSSSEISGVSGQKPPEKSTFSQTCSLLSQYLKEKGSFGDLTLGMTCTTETNGSPETSCLSAMNLFPNKENKMTHPNVTTMDFLSPHNDYSPHSTKEVPTLVNPSAFKSLCKEPKAAQLTIFYGGQVIVYDDFPADKVDEIMSLARKGISQNQNTSVHAHTQPSMIQEHPHAPPSPIVCDLPIARKASLHRFLEKRKDRIASKAPYQTSNPMTAPNKLAESMAWLGC* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1316 227 SMART tify_2 112 147 IPR010399 -
Lan1g1316 227 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g1316 227 Pfam Jas motif 182 207 IPR018467 -
Lan1g1316 227 ProSiteProfiles Tify domain profile. 112 147 IPR010399 -
Lan1g1316 227 PANTHER PROTEIN TIFY 10A 16 226 - -
Lan1g1316 227 Pfam tify domain 113 145 IPR010399 -
Lan1g1316 227 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 226 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1316 Lan-Chr1 22866242 22868277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1316 1 226 Tify Gene Family AT1G19180 41.502 3.62e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan1g1316 tify 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1316 K13464 - gmx:100802800 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0959 12 16446447 16448923 Lan1g1316 1 22866242 22868277 LSH
Lan1g1316 1 22866242 22868277 Lan1g0443 1 3572478 3574732 LSH
Lan1g1316 1 22866242 22868277 Lan15g0188 15 2014348 2016921 PCT
Lan1g1316 1 22866242 22868277 Lan14g0104 14 1376743 1379156 PCT
Lan15g0188 15 2014348 2016921 Lan1g1316 1 22866242 22868277 PCT
Lan14g0104 14 1376743 1379156 Lan1g1316 1 22866242 22868277 PCT