Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1295 ATGGAAAGAAGTCCTTGTTGTTCAAAAGATGGTTTGAACAAAGGTGCTTGGACACCAAATGAAGACAAAATCCTCATAGAATTCATTAAGGTGCATGGAGAAGGAAGATGGAGAAGCATGCCTAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTAGATGGTTGAATTATCTGCGACCAGATATTAAGAGAGGCAATATATCTTTGGATGAAGAAGACCTTATTATTAGGCTTCACAGTCTCTTGGGGAACAGATGGTCTCTAATAGCAGGAAGGCTGCCAGGGCGAACAGACAATGAAATTAAGAATTATTGGAACAACCATTTAGGTAAGAAGGTTAAAGATGGTCACCAAATTACCACCAATTCAAAGAGCATAGAGAATCCAAAGTCCAAGCCATCCCCCAAGGTTAAGGTTAAGGTCACTGCCTCACCCTCTCATCTCAAGTTAGACACCCATGTGGTCCTTAAAAAAACCAACAAGTGCTCTTCTATGTTAATCAAGAACCCACTCCCTCAGCCATCAATGCAATTGCATAACATGTCAAAGACAGAGGATGCTATATCCAATAATGATTCAAGAAGTGACCAAATTGAGCCAAATGACAAAAGTGGGTTTTTGTCATTTATCAATGAAGAAGAAAAAGAACTCTCAACAGATTTGCTAAAAGATTTCATGGTTAGAGGAGATATTTGCTCATCTGACATTCTCAACTCAGATTTCTCCAATATGTGTGATTTCAGTTACAGTGACAATAGCAATGAGAATATATTATCATCTTTATCTGATGAAATTCTCATGGATTGGACACAAAGTAGTCTTGCTCATGAAACAAATGTGTCAAATAGAGAATAA 864 0.3785 MERSPCCSKDGLNKGAWTPNEDKILIEFIKVHGEGRWRSMPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISLDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNNHLGKKVKDGHQITTNSKSIENPKSKPSPKVKVKVTASPSHLKLDTHVVLKKTNKCSSMLIKNPLPQPSMQLHNMSKTEDAISNNDSRSDQIEPNDKSGFLSFINEEEKELSTDLLKDFMVRGDICSSDILNSDFSNMCDFSYSDNSNENILSSLSDEILMDWTQSSLAHETNVSNRE* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1295 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan1g1295 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan1g1295 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan1g1295 287 SMART sant 66 114 IPR001005 -
Lan1g1295 287 SMART sant 13 63 IPR001005 -
Lan1g1295 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan1g1295 287 CDD SANT 16 61 IPR001005 -
Lan1g1295 287 Gene3D - 71 144 - -
Lan1g1295 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan1g1295 287 PANTHER TRANSCRIPTION FACTOR TT2 1 263 - -
Lan1g1295 287 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 263 - -
Lan1g1295 287 CDD SANT 71 112 IPR001005 -
Lan1g1295 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan1g1295 287 Gene3D - 11 67 - -
Lan1g1295 287 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan1g1295 287 MobiDBLite consensus disorder prediction 120 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1295 Lan-Chr1 22673830 22675474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1295 4 116 MYB Transcription Factor Family AT3G13540 75.221 2.63e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan1g1295 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1295 K09422 - gmx:100781908 331.643