Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1293 ATGGCGACTCAGATAGCAATGAGTAAGAAGAGAAAGTTCGTAGCTGATGGAGTTTTCTTCGCTGAATTGAATGAAGTTTTGACCAGAGAGCTTGCTGAAGATGGATACTCCGGTGTTGAGGTTAGAGTTACCCCAATGCGCACCGAGATCATTATCAGAGCCACTCGAACCCAAGCCGTACTTGGTGAGAAGGGAAGAAGAATCAGGGAGCTGACGTCAGTGGTGCAGAAGAGATTCAAGTTTCAAGAGAACACTGTGGAGCTATATGCTGAGAAGGTTAATAACAGAGGTCTTTGTGCTATTGCCCAAGCTGAATCTCTGCGTTACAAGCTTCTTGGTGGCCTCGCCGTTCGTAGGGCTTGCTATGGTGTCTTGAGATTTGTTATGGAAAGCGGTGCCAAGGGTTGCGAGGTCATTGTCAGTGGTAAATTGAGGGCCCAGCGAGCCAAATCTATGAAGTTCAAGGATGGGTACATGATTTCCTCAGGGCAACCAGTCAAAGATTACATAGACTCTGCAGTGAGACATGTCCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTAAAGATTATGCTTGATTGGGATCCTAAGGGGAAGCAAGGGCCTAAAACTCCACTCCCTGATATTGTGACAATTCACACTCCCAAGGAGGAAGAAGAATATATCAGACCTGCTGCTGTGCTGGCTAATGATGTTGTTGAGGTCCCTGTGGCTTGA 717 0.47 MATQIAMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFQENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVLANDVVEVPVA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1293 238 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 6 227 - -
Lan1g1293 238 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 227 - -
Lan1g1293 238 CDD 40S_S3_KH 17 97 - -
Lan1g1293 238 Pfam Ribosomal protein S3, C-terminal domain 108 190 IPR001351 GO:0003735|GO:0006412
Lan1g1293 238 Gene3D - 95 221 IPR036419 -
Lan1g1293 238 ProSiteProfiles Type-2 KH domain profile. 23 94 IPR004044 GO:0003723
Lan1g1293 238 ProSitePatterns Ribosomal protein S3 signature. 149 185 IPR018280 -
Lan1g1293 238 SUPERFAMILY Ribosomal protein S3 C-terminal domain 95 193 IPR036419 -
Lan1g1293 238 Pfam KH domain 22 95 IPR004044 GO:0003723
Lan1g1293 238 TIGRFAM uS3_euk_arch: ribosomal protein uS3 10 212 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lan1g1293 238 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 12 101 IPR009019 GO:0003723
Lan1g1293 238 Gene3D - 2 93 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1293 Lan-Chr1 22661043 22664305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1293 1 237 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.611 2.76e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1293 K02985 - gmx:100808705 441.81