Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1292 ATGAAAGAAATGAGTGATTTTAATCCAAGCCACTTAACAATGTCACCCCATCCTGCTAATTTTTCCAAAACAAACAAATCCAGCATGCCCATGTTATACTATGGTTTAGCAATGGTTGGTGCTGCAGCAATAGCACTAATCTTATACAATCTCATTAATATCATTACCAAAATGTGCAACCAGAGCCACATGCAATCATCACAAGATGAAGTGGTTATTGATGTGGCCATAGGAAGTAGTAGCATGAGCTTTGATAATTCAAGAAGGAACTTGCTTTCAAGCTTTAAGTATAAGAAAGAAGGTGGTAGTGGTGGAGATGATTATGAATGTTCAGTTTGCTTATCTGATTTAGAAGAAGGAGAAGAGGTGAAGAAGCTACCAAGGTGCAAACACTCTTTCCATGTTCAATGCATTGACATGTGGCTTCATTCTCACCATGATTGCCCAGTTTGTAGAACACCTGTTGGGCATTCTTGTCACCATTTCACACCAGAGAATGTAACTCAAGTCATGTTGGCAACAGGTGGCATCTTAGTTTGA 540 0.3907 MKEMSDFNPSHLTMSPHPANFSKTNKSSMPMLYYGLAMVGAAAIALILYNLINIITKMCNQSHMQSSQDEVVIDVAIGSSSMSFDNSRRNLLSSFKYKKEGGSGGDDYECSVCLSDLEEGEEVKKLPRCKHSFHVQCIDMWLHSHHDCPVCRTPVGHSCHHFTPENVTQVMLATGGILV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1292 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 157 IPR013083 -
Lan1g1292 179 SMART ring_2 110 151 IPR001841 -
Lan1g1292 179 Pfam Ring finger domain 109 152 IPR001841 -
Lan1g1292 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 160 IPR044675 -
Lan1g1292 179 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 13 160 - -
Lan1g1292 179 SUPERFAMILY RING/U-box 103 160 - -
Lan1g1292 179 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1292 Lan-Chr1 22659107 22659984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1292 36 155 C3H Transcription Factor Family AT5G17600 35.385 1.39e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1292 - - aprc:113852327 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1292 1 22659107 22659984 Lan15g0167 15 1828032 1829200 PCT
Lan15g0167 15 1828032 1829200 Lan1g1292 1 22659107 22659984 PCT