Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1289 ATGTTCCTCTTGTTGAATCACACTGATACGGTGTTCAATTGTTCACAAGTCGATTGCAGTCACTCAATGGCTTATGCTCCTTATCCTTATGATGGTGATCCTTCTTTTGGTGGTTCATTAGTTGCTTATGGACCACATGCTATTAATCAATCCCAAATGTTTCCCCAAATGCTGGGCCTGGGATTAGCATCCGCCAGAATTGCATTACCACCCGATTTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGCATACTGCGAAGGCGACAGTCGCGAGCAAAACTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCTTTGAAGAGGGTTAGGGGAACAGGCGGACGCTTTCTTAGTGCTAAACAGCTGCAACAATCTAATGCAGAAGTTGTCTCTAGTGCTCATTCAGGCTCAGACCCTGTGAACTTATATAAAAATAAAGATGCATCTGAGGTGGAAAGTCATCCCTCAAGAATGCGAGAAAATGCTGAACTAACAACTTTGTCCAGCAACAGTGTCATATTTAGGCAGCATGAACTACAATTCTTAGGTAACTCCCCGAATATAGAACTACGAGCATCACAATGCAGCGGGGGATTCACCTTCAGTGGCGGCGGAACCGAGCAAAATTAA 678 0.4454 MFLLLNHTDTVFNCSQVDCSHSMAYAPYPYDGDPSFGGSLVAYGPHAINQSQMFPQMLGLGLASARIALPPDFAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGTGGRFLSAKQLQQSNAEVVSSAHSGSDPVNLYKNKDASEVESHPSRMRENAELTTLSSNSVIFRQHELQFLGNSPNIELRASQCSGGFTFSGGGTEQN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1289 225 SMART cbf3 74 135 IPR001289 GO:0003700|GO:0006355
Lan1g1289 225 MobiDBLite consensus disorder prediction 161 175 - -
Lan1g1289 225 PRINTS CCAAT-binding transcription factor subunit B signature 78 100 IPR001289 GO:0003700|GO:0006355
Lan1g1289 225 PRINTS CCAAT-binding transcription factor subunit B signature 109 132 IPR001289 GO:0003700|GO:0006355
Lan1g1289 225 ProSiteProfiles NF-YA/HAP2 family profile. 75 135 IPR001289 GO:0003700|GO:0006355
Lan1g1289 225 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 205 IPR001289 GO:0003700|GO:0006355
Lan1g1289 225 MobiDBLite consensus disorder prediction 146 177 - -
Lan1g1289 225 ProSitePatterns NF-YA/HAP2 subunit signature. 80 100 IPR018362 GO:0003677|GO:0016602
Lan1g1289 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 205 - -
Lan1g1289 225 Gene3D - 75 137 - -
Lan1g1289 225 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 78 132 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1289 Lan-Chr1 22638949 22641975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1289 54 148 CCAAT-HAP2 Transcription Factor Family AT1G54160 65.263 2.78e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan1g1289 CBFB_NFYA 5.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1289 K08064 - gmx:100792905 295.434