Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1287 ATGGACGGTGGAGCACAATACAATCCTCGAACTGTGGAAGAGGTTTTCAAAGATTTCAAAGGACGTAGAGTTGCAATCATCAAAGCCCTCACCACTGATGTTGACCAATTTTTCCAGCAGTGTGATCCTGAAAAGGATAATTTATGTCTGTACGGGCTCCCCACTGAACAATGGGAGGTTAATTTACCAGCAGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCTTTGGGCATAAATTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGTTGTCTTTGGTTGCTGTTCACAGTGATGCATGGTTACTTGCTGTGGCTTTCTACTTTGGGGCGAGATTTGGATTTGATAGAGCAGACAGGAAACGCCTGTTCACTATGGTTAATGATCTACCTACAATATTTGAGGTGGTGACTGGAACTGCCAAGAAACAAACTATGGAAAAGTCATCCATTTCGAACGTCACTGGTAACAAATCAAAGTCTGGCTCAAAAGGGCGAGGATCTGAATCAGGGAAGTACTCAAAGCTAGCAGAGGAGGAGGAGGAGGTGTTAGTGGAAGATGAGGAGGAGGTGTTAGTGGAACAAGATGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGGGAAAACTATGCAACTGATGAGTTTTGGATTTGTTGTGACATATGCGAGAAATGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCCAGGGCTGATCACATCAAGCAGTATAAGTGCCCCTCGTGCAGCAATAAGAGGGCACGCCCTTGA 774 0.4599 MDGGAQYNPRTVEEVFKDFKGRRVAIIKALTTDVDQFFQQCDPEKDNLCLYGLPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDRADRKRLFTMVNDLPTIFEVVTGTAKKQTMEKSSISNVTGNKSKSGSKGRGSESGKYSKLAEEEEEVLVEDEEEVLVEQDEEHGETLCGACGENYATDEFWICCDICEKWFHGKCVKITPARADHIKQYKCPSCSNKRARP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1287 257 MobiDBLite consensus disorder prediction 145 179 - -
Lan1g1287 257 Pfam PHD-finger 204 253 IPR019787 -
Lan1g1287 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Lan1g1287 257 CDD PHD_AL_plant 203 253 IPR044104 -
Lan1g1287 257 PANTHER CPG BINDING PROTEIN 3 257 IPR045104 GO:0006355|GO:0042393
Lan1g1287 257 SMART PHD_3 203 251 IPR001965 -
Lan1g1287 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 252 IPR013083 -
Lan1g1287 257 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lan1g1287 257 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 257 - -
Lan1g1287 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Lan1g1287 257 MobiDBLite consensus disorder prediction 145 168 - -
Lan1g1287 257 SUPERFAMILY FYVE/PHD zinc finger 195 254 IPR011011 -
Lan1g1287 257 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1287 Lan-Chr1 22629048 22631861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1287 1 256 Alfin-like Transcription Factor Family AT3G42790 73.930 1.17e-124 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan1g1287 Alfin 5.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1287 - - gmx:100500110 441.81