Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1282 ATGAAGAAAGAAGGGTTGGGCCTTGGTCTCAAACTCTCTGTTCCTGTTTCTGATCAGGCTTCTTTTGCCAAGTTTTTAACTGAAAGTGGCACTTTTAAGGATGGGGATCTACTTGTTAACAGAGATGGTCTTCGAATTGTTTCCCAGAGTGAAATTGAAGCTCCGCCCCCAATCAAGCCAACCGATGAGCAGTTAAGTTTGGCAGACATAGACATAGTGAAAGTGGTTGGGAAGGGAAGTGGAGGAGTTGTGCAATTGGTGCAACACAAATGGACTAGCCAATTTTTTGCATTGAAGATAATTCAAATGAATATTGAGGAGTCTATGCGCAAGCAGATAGTAAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTTTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGATCCTTAGCAGATCTTCTGAAGAAAGTTAAAACAATTCCAGAGCCTTATCTTGCTGCCATCTTTAAGCAGGTTCTGAAGGGTTTAGTGTATCTTCACCATGAAAGGCATATCATCCACAGAGACTTAAAGCCTTCTAATTTGTTGATAAATCATAGAGGCGAAGTAAAGATAACTGACTTCGGTGTGAGTACAATTATGGAAAGCACATCTGGTCAAGCAAATAGTTTCATTGGCACACGCAACTATATGTCGCCAGAGAGAATCGATGGTAGCCAGCAACAAGGATACAACTACAAAAGTGATATATGGAGTTTCGGACTAATATTGCTCGAGTGTGCTTTGGGGAAGTTTCCATATACCCCACCAGATCAAACGGAAAGATGGGAAAGTATTTTTGAGCTTATTGAAGCCATTGTCGATCAACCTCCTCCGAGTGCTCCATCTGAACAATTTTCTAAAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAGACCCAAGGGATAGACTGTCGGCTCAGCAACTTATGAACTATCCTTTTATGAGCATGTATGAGGACTTGGATGTGGATCTTTCAGCTTACTTCTCCAATGCAGGATCTCCGCTTGCAACCTTATAA 1074 0.4069 MKKEGLGLGLKLSVPVSDQASFAKFLTESGTFKDGDLLVNRDGLRIVSQSEIEAPPPIKPTDEQLSLADIDIVKVVGKGSGGVVQLVQHKWTSQFFALKIIQMNIEESMRKQIVKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSLADLLKKVKTIPEPYLAAIFKQVLKGLVYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSTIMESTSGQANSFIGTRNYMSPERIDGSQQQGYNYKSDIWSFGLILLECALGKFPYTPPDQTERWESIFELIEAIVDQPPPSAPSEQFSKEFCSFISACLQKDPRDRLSAQQLMNYPFMSMYEDLDVDLSAYFSNAGSPLATL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1282 357 Gene3D Transferase(Phosphotransferase) domain 1 150 353 - -
Lan1g1282 357 PANTHER MAP KINASE KINASE 3 357 - -
Lan1g1282 357 SMART serkin_6 70 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1282 357 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lan1g1282 357 ProSiteProfiles Protein kinase domain profile. 70 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1282 357 CDD PKc_MAPKK_plant_like 85 337 - -
Lan1g1282 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lan1g1282 357 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 357 - -
Lan1g1282 357 SUPERFAMILY Protein kinase-like (PK-like) 64 338 IPR011009 -
Lan1g1282 357 Pfam Protein kinase domain 73 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1282 357 Gene3D Phosphorylase Kinase; domain 1 44 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1282 Lan-Chr1 22591721 22596533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1282 1 328 MAP Kinase Kinase Gene Family AT4G29810 68.546 4.38e-175 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lan1g1282 Pkinase 2.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1282 K20603 - gmx:547701 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0993 12 16651401 16655873 Lan1g1282 1 22591721 22596533 LSH
Lan1g1282 1 22591721 22596533 Lan15g0161 15 1777987 1782405 PCT
Lan15g0161 15 1777987 1782405 Lan1g1282 1 22591721 22596533 PCT