Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1278 ATGGAGATGGAGAATGGTGTGAAAAAGGAAGAGGATGATGAACATGCATTGGAATGTGAAGAGGATGAAGGAGATGAGGTTTCAAGCATGACAATGGAGAGGGTTGCTGCTGCTAAGAAATTTATTGAAAACCATTACAAGTCTGAGAAGAAGCTATTACATGAACGCAAACAGAGGCGCTCGGTGCTGGAAGAGAAGTTAGCATCTTCTCATGTTCCAGAAGAGGAACAAATGAATCTACTAAAGGATTTAGAGCGCAAGGAGACTGAATATATTCGCTTAAAAAGACATAAAATATGTGCTGAAGATTTTGATCTTCTAACCATTATTGGAAGGGGAGCTTTTGGAGAGGTAACACTGTGTAGGGAGAAGAAATCAGGTAACATATATGCCATGAAAAAACTGAAGAAGTCTGAAATGCTCCGCAGAGGACAGGTTGAGCATGTTAGAGCCGAAAGGAACTTACTTGCAGAAGTTGCTAGTGACTGCATTGTGAAACTGTATTACTCTTTTCAGGATATTGAACACTTATATCTGATCATGGAGTATTTACCTGGTGGTGATATAATGACTTTGCTTATGAGGGAAGAAACTTTAACTGAAACAGTAGCTAGATTTTACATTGCCCAAAGTGTTTTGGCCATAGAGTCTATTCATAAACACAACTACATTCATCGAGATATAAAACCAGATAATCTTCTACTAGACCAAAATGGTCACATGAAGCTCTCTGATTTTGGCCTTTGCAAGCCACTTGACTATGTAACTTTGTCATCTATAAATGAAGATGAGTTCCTTGATGATGAGAACTTAAATGAGACTATGGTTGTTAGAAATGGAAGGCGCTGGGAAAGCCCCCAAGAACAACTTCAGCATTGGCAAATGAACAGGAGGAAGCTGGCATTTTCAACTGTTGGAACTCCAGATTACATTGCTCCTGAAGTATTGCTGAAAAGAGGATACGGCGTTGAGTGTGATTGGTGGTCTCTTGGAGCTATAATGTATGAGATGCTTGTTGGCTATCCCCCATTTTACTCCGATGATCCGCTAACAACATGCAGAAAGATCGTGTATTGGAAAAATCACTTAAATTTTCCGGAGGAGGCCAGGTTGACGCCTGAAGCAAAGGATCTAATATGTGGATTGCTTTGTGATGCTGAGCATAGGCTAGGTACCAGAGGAGCAGAAGAAATCAAGGCTCATCCTTGGTTCAAAGATGTTGCATGGGACAAACTCTATGAAATGGATGCAGCATTTAAACCACAAGTCAATGGGGAGCTTGACACTCAAAATTTTATGAAATTTGATGAGGTTGAAGTACAACCAAAATCAACTACAACTGCATCTGGTGCATTCAGAAAGATGACCCCTCAAGATCTCAATTTTGTTGGCTATACATACAAAAATTTTGCTGCTGTCAAGGGGAAGCATAGTTCTAATGGGAAGGAGTGCATGTCACCACAACTATCATCAGTTGATTCTGCACAAGTGATTCTGGAATAG 1503 0.4019 MEMENGVKKEEDDEHALECEEDEGDEVSSMTMERVAAAKKFIENHYKSEKKLLHERKQRRSVLEEKLASSHVPEEEQMNLLKDLERKETEYIRLKRHKICAEDFDLLTIIGRGAFGEVTLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASDCIVKLYYSFQDIEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDQNGHMKLSDFGLCKPLDYVTLSSINEDEFLDDENLNETMVVRNGRRWESPQEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKRGYGVECDWWSLGAIMYEMLVGYPPFYSDDPLTTCRKIVYWKNHLNFPEEARLTPEAKDLICGLLCDAEHRLGTRGAEEIKAHPWFKDVAWDKLYEMDAAFKPQVNGELDTQNFMKFDEVEVQPKSTTTASGAFRKMTPQDLNFVGYTYKNFAAVKGKHSSNGKECMSPQLSSVDSAQVILE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1278 500 Gene3D Transferase(Phosphotransferase) domain 1 299 422 - -
Lan1g1278 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lan1g1278 500 Pfam Protein kinase C terminal domain 423 467 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lan1g1278 500 MobiDBLite consensus disorder prediction 1 30 - -
Lan1g1278 500 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Lan1g1278 500 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 497 - -
Lan1g1278 500 ProSiteProfiles Protein kinase domain profile. 104 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1278 500 SUPERFAMILY Protein kinase-like (PK-like) 87 451 IPR011009 -
Lan1g1278 500 SMART pkinase_C_6 405 469 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan1g1278 500 Gene3D Phosphorylase Kinase; domain 1 423 433 - -
Lan1g1278 500 CDD STKc_NDR_like 102 468 - -
Lan1g1278 500 Gene3D Transferase(Phosphotransferase) domain 1 184 251 - -
Lan1g1278 500 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 9 497 - -
Lan1g1278 500 SMART serkin_6 104 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1278 500 Gene3D Phosphorylase Kinase; domain 1 102 183 - -
Lan1g1278 500 ProSiteProfiles AGC-kinase C-terminal domain profile. 405 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan1g1278 500 Pfam Protein kinase domain 106 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1278 500 Pfam Protein kinase domain 296 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1278 Lan-Chr1 22557733 22562874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1278 21 487 AGC Kinase Gene Family AT2G19400 75.574 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lan1g1278 Pkinase 2.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1278 K08790 - gmx:100811359 799.66