Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1276 ATGTCAACCTCCCTCGCCGCCGGCGGCGGACTCAGAACACTTGCCGTCGCCGTTACTAGTGGCTCCGGCACCGGTAGGGGTAGCTGTCGAGCCGTAGATTGGGCGGTCGAGAATCTCTTGCCTCAAGCTGATAGGTTCATCTTAGTCCACGTCATCCCTGCGATCACTTCAATTCCAACCCCAAGTGGAGAATATATTCCTATTTCGGAAGCAGATAACGATGTGCTTGCAACTTACATGCATGATGTGAAACAAAGATCTGAAGAAATCTTTGTTCCATTCAAGAAACTCTGCAAAATAAACACTGTGGAAACCTTGCTTCTAGAAGATGACAATCCTGCTAATGCACTTCTTAGCTTTATCTCGGAGTCTGGGATCCAAATGTTAGTGATGGGCTCTTACTCCTCAAATTTTATAACAAGGAAGCTAAAAGGACCAGGGATACCAACAACTGTTCTAAGATGTGCACCTGACAGCTGTGATGTATATCTTATAGCTCGAGATAGAATTATATCGAAGCTGTCCGATTCTTCAGCTTCAGCTTCTTATGAGACTAGTTCAAGGTACTCAATGTCTACTCAAATGAATAAAGGAGAAAATGGCGCTGGCATTGGTAGCGAAGCATCTAGATTTAACTCATCCTCAGCAGAACCTGAAAGTCCAAAAAATTTCAAGTTTTTGTCAATATCAGCTCGTAGTTACATCGGTCTTCAGATATCTAGTCGTAGGAGTTCTTTTGAAAATCATACTAGAAATGAAGAACAAAATCTAGAAAATTGTGATGATGATTTTGAAACTTTTAGCCTCCACTCATTTGATTCCATAGCTTCTGTACAACGTGAACAGTTAGCCGTGCAAGAAGAAGTGGAACGTCTACAGCTGGAGTTGCAGAATACTGTTGCAATGTACAAACAAGCATGTGAAGAGTTGGTTCATGCTCAAAGCAAGGCCCTTTTACTCTCTTCTGAATCTCTTGAAGAAGCTAAAAGAGTAAATGATTCCCTGAAAAGAGAGGAGACCTTGAGAAAGATTGCTGCTGAAGAGAATACAAAGTATTTAAAAGTCATGAAGGAGCTTGAGGAGGCAAAAGAAATGTTTGCCAAAGAGTCATATGAAAGACAGTTGGCTGAACTTAATGTTGCAAGAGAATTCATAGAAAAGCGGAGAATAGTGGATACATTGCTCTCAAATGATAGGAGATACAGAAAGTACACTATAGATGAAATCCAGATAGCGACAGACTTCTTCTCCGAGGACTTGATAATTGGTGAAGGAGGGTACGGGAAAGTTTACAAGTGCACTCTGGATCACACACCAGTAGCTGTAAAGGTTTTGCACTACGATGCAATGAACAAGAAAGAAGAATTTCTTATAGAGGTTGAGATTCTTAGTCAGCTACACCATCCAAATATGGTTTTGTTACTTGGAGGATGTCCTGAGAAGGGTTGTCTTGTTTATGAATACATGGAAAATGGTAGTCTTGAAGATTATCTTTTCAGCAAGGGAAAAGCACCTCTGCCTTGGTATGTTAGATTCCATATAGCTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAACGCCAAGCCAGAGCCTATTGTTCATCGAGATATGAAACCTGGCAATATCTTGTTAGACAGAAATTACGTGAGCAAAATTTCAGATGTAGGACTGGCTAAACTCCTTGAAGATGTTGTGCCTGACAATGTCACAGAGTACAGAGAATCGGTGATTGCTGGAACTATACACTACATGGATCCAGAGTATCAGAGGACTGGCACCCTCCGACCAAAATCAGATGTATATGCTTTTGGAGTCATAACTCTCCAATTGTTAACTGGTCGCCATGCACGAGGAGTTATTATGACCGTAGAAGATGCAATTATAAAAGGTTCCTTCCGTGATATTTTAGATAGATCAGCTGGAGATTGGCCACTGGAAGAGGCAGCAGAGTTGGCCCAAATCGCCCTTAGATGCGTTGAACTTAGATGCAGAGATAGACCAGAACTTGACACTGAAGTTCTTCCCGTGCTCAAAAGACTTTCTGATGTGACAAATGCTAGTGCAAGAGTAGGAATAAATAGCAGAGGCACACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATAATGGATGATCCACATATTGCTGCGGATGGTTTTACTTATGAATACAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTATCACCCGTGACAAAGCGCAAACTCCAGCATTCTATGTTGACTCCAAACCAAACTTTACGTTCTGCCATTCAGGAGTGGAAATCAGGAGTGACTTCATTTGATTAG 2316 0.4167 MSTSLAAGGGLRTLAVAVTSGSGTGRGSCRAVDWAVENLLPQADRFILVHVIPAITSIPTPSGEYIPISEADNDVLATYMHDVKQRSEEIFVPFKKLCKINTVETLLLEDDNPANALLSFISESGIQMLVMGSYSSNFITRKLKGPGIPTTVLRCAPDSCDVYLIARDRIISKLSDSSASASYETSSRYSMSTQMNKGENGAGIGSEASRFNSSSAEPESPKNFKFLSISARSYIGLQISSRRSSFENHTRNEEQNLENCDDDFETFSLHSFDSIASVQREQLAVQEEVERLQLELQNTVAMYKQACEELVHAQSKALLLSSESLEEAKRVNDSLKREETLRKIAAEENTKYLKVMKELEEAKEMFAKESYERQLAELNVAREFIEKRRIVDTLLSNDRRYRKYTIDEIQIATDFFSEDLIIGEGGYGKVYKCTLDHTPVAVKVLHYDAMNKKEEFLIEVEILSQLHHPNMVLLLGGCPEKGCLVYEYMENGSLEDYLFSKGKAPLPWYVRFHIAFEMACGLSFLHNAKPEPIVHRDMKPGNILLDRNYVSKISDVGLAKLLEDVVPDNVTEYRESVIAGTIHYMDPEYQRTGTLRPKSDVYAFGVITLQLLTGRHARGVIMTVEDAIIKGSFRDILDRSAGDWPLEEAAELAQIALRCVELRCRDRPELDTEVLPVLKRLSDVTNASARVGINSRGTPSQYYCPILQEIMDDPHIAADGFTYEYRAIKAWLSKHNVSPVTKRKLQHSMLTPNQTLRSAIQEWKSGVTSFD* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1276 771 CDD STKc_IRAK 422 681 - -
Lan1g1276 771 Gene3D Phosphorylase Kinase; domain 1 395 488 - -
Lan1g1276 771 PANTHER OS02G0152300 PROTEIN 13 766 - -
Lan1g1276 771 MobiDBLite consensus disorder prediction 185 220 - -
Lan1g1276 771 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 162 - -
Lan1g1276 771 Gene3D Transferase(Phosphotransferase) domain 1 489 695 - -
Lan1g1276 771 SMART serkin_6 416 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1276 771 CDD RING-Ubox_WDSUB1_like 702 742 - -
Lan1g1276 771 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 13 766 - -
Lan1g1276 771 ProSiteProfiles U-box domain profile. 697 770 IPR003613 GO:0004842|GO:0016567
Lan1g1276 771 SMART Ubox_2 701 763 IPR003613 GO:0004842|GO:0016567
Lan1g1276 771 Coils Coil 342 365 - -
Lan1g1276 771 SUPERFAMILY Protein kinase-like (PK-like) 399 670 IPR011009 -
Lan1g1276 771 Coils Coil 368 388 - -
Lan1g1276 771 Pfam Protein tyrosine and serine/threonine kinase 421 671 IPR001245 GO:0004672|GO:0006468
Lan1g1276 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Lan1g1276 771 Gene3D HUPs 15 169 IPR014729 -
Lan1g1276 771 SUPERFAMILY RING/U-box 696 764 - -
Lan1g1276 771 CDD STK_N 13 167 - -
Lan1g1276 771 ProSitePatterns Protein kinases ATP-binding region signature. 422 443 IPR017441 GO:0005524
Lan1g1276 771 Pfam U-box domain 699 764 IPR003613 GO:0004842|GO:0016567
Lan1g1276 771 ProSiteProfiles Protein kinase domain profile. 416 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan1g1276 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 768 IPR013083 -
Lan1g1276 771 Coils Coil 275 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1276 Lan-Chr1 22548054 22553951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1276 13 765 Plant U-box Gene Family AT5G57035 53.299 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lan1g1276 PK_Tyr_Ser-Thr 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1276 - - gmx:100805896 1152.12